Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10747547	0.85[EUR][1000 genomes]
rs11168599	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11168637	0.94[JPT][hapmap]
rs11458	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs12371700	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs12815544	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs2114322	1.00[JPT][hapmap]
rs2705132	0.80[YRI][hapmap]
rs2731091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2731092	0.84[CEU][hapmap]
rs2731094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2731095	0.93[EUR][1000 genomes]
rs2731097	0.93[EUR][1000 genomes]
rs2731099	0.84[CEU][hapmap]
rs2731106	0.80[CEU][hapmap]
rs2731107	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2956467	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7139348	0.84[CEU][hapmap]
rs7294341	0.86[EUR][1000 genomes]
rs7294585	0.84[CEU][hapmap]
rs7310960	0.88[EUR][1000 genomes]
rs7312017	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs7958521	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs7974213	0.92[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv975416	chr12:48882416-48893049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48883800-48885200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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