Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48852008..48853730-chr12:48876286..48878217,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANP32D-1	chr12:48853239-48853296	XLOC_009736
2	lnc-ANP32D-1	chr12:48853238-48853540	NONHSAT028001

Variant related genes	Relation type
ENSG00000177627	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10747547	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11168560	0.80[AMR][1000 genomes]
rs11168561	0.80[AMR][1000 genomes]
rs11168562	0.80[AMR][1000 genomes]
rs11168577	0.83[ASN][1000 genomes]
rs11168586	0.83[ASN][1000 genomes]
rs12371700	0.81[ASN][1000 genomes]
rs2731091	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2731092	0.84[CEU][hapmap]
rs2731094	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2731095	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2731097	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2731099	0.85[CEU][hapmap]
rs2731102	1.00[CEU][hapmap]
rs2731106	0.81[CEU][hapmap]
rs2731107	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35338015	0.81[ASN][1000 genomes]
rs6580671	0.83[ASN][1000 genomes]
rs7139348	0.84[CEU][hapmap]
rs7294341	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7294585	0.84[CEU][hapmap]
rs7310960	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312017	0.89[CEU][hapmap]
rs7955785	0.85[ASN][1000 genomes]
rs7972785	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48851800-48854800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:48851800-48855000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:48851800-48855400	Weak transcription	Pancreas	Pancrea
4	chr12:48852600-48854000	Enhancers	K562	blood

Quick Search: