Variant report

Variant	rs7955785
Chromosome Location	chr12:48862538-48862539
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10747547	0.81[ASN][1000 genomes]
rs10875827	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10875829	0.87[EUR][1000 genomes]
rs10875833	0.81[EUR][1000 genomes]
rs11168577	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168586	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168618	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168619	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168637	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12371700	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12372687	0.81[AMR][1000 genomes]
rs12815544	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2114322	0.92[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap]
rs2731091	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs2731094	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs2731102	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs2956467	0.85[ASN][1000 genomes]
rs35338015	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4359253	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56354789	0.84[AMR][1000 genomes]
rs57444623	0.92[ASN][1000 genomes]
rs6580671	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7294341	0.81[ASN][1000 genomes]
rs7302209	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7310960	0.85[ASN][1000 genomes]
rs7312017	0.94[JPT][hapmap]
rs7314569	0.80[AMR][1000 genomes]
rs7958521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7972785	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7974213	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7980421	0.81[EUR][1000 genomes]
rs9268	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48862200-48862600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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