Variant report

Variant	rs11168586
Chromosome Location	chr12:48854012-48854013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48589603..48591970-chr12:48853785..48856420,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10875827	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10875829	0.84[EUR][1000 genomes]
rs11168577	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11168599	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11168618	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168619	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168637	0.92[CEU][hapmap]
rs11458	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12371700	0.96[CEU][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12372687	0.83[AMR][1000 genomes]
rs12815544	0.92[CEU][hapmap]
rs2114322	0.93[CEU][hapmap]
rs2232566	0.84[JPT][hapmap]
rs2956467	0.83[ASN][1000 genomes]
rs35338015	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4359253	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56354789	0.83[AMR][1000 genomes]
rs57444623	0.90[ASN][1000 genomes]
rs6580671	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7302209	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7310960	0.83[ASN][1000 genomes]
rs7314569	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7955785	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7958521	1.00[CEU][hapmap]
rs7972785	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7974213	0.92[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48851800-48854800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:48851800-48855000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:48851800-48855400	Weak transcription	Pancreas	Pancrea

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