Variant report

Variant	rs4359253
Chromosome Location	chr12:48927708-48927709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10875827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10875829	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10875833	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11168577	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168586	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168599	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168618	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168619	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168637	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11458	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12371700	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12815544	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2114322	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35338015	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57444623	0.88[ASN][1000 genomes]
rs6580671	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7302209	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7955785	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7972785	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7974213	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7976324	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7980421	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1047600	chr12:48927514-48954225	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1048307	chr12:48927514-48958949	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48924400-48927800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr12:48924600-48927800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr12:48925200-48927800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr12:48925200-48928000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr12:48926600-48927800	Enhancers	Primary T cells from cord blood	blood

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