Variant report

Variant	rs2732749
Chromosome Location	chr7:84825607-84825608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17560655	1.00[CHB][hapmap]
rs17561700	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs17562848	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17648312	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2240890	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2534854	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2534866	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2534867	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2534872	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2534873	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2732751	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2732754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2732755	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2732757	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2732762	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34319950	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56918106	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61131189	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62462197	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62462217	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888645	chr7:84738495-84842884	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv888646	chr7:84754151-84905855	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84821000-84827000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:84824000-84826200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:84824000-84827400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:84824400-84827200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:84824600-84826800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:84824800-84827600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:84825400-84827600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:84825600-84827200	Enhancers	HUES64 Cell Line	embryonic stem cell

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