Variant report

Variant	rs2732754
Chromosome Location	chr7:84815695-84815696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10486848	1.00[ASN][1000 genomes]
rs17560655	1.00[ASN][1000 genomes]
rs17561700	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17562848	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17648312	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2240890	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2534854	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2534866	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2534867	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2534872	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2534873	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2732749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2732751	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2732755	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2732757	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2732762	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34319950	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56918106	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61131189	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62462197	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62462217	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73194401	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888645	chr7:84738495-84842884	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv888646	chr7:84754151-84905855	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84814000-84816000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
2	chr7:84814000-84816000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
3	chr7:84814000-84816400	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr7:84814000-84816400	Active TSS	Spleen	Spleen
5	chr7:84814200-84816000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
6	chr7:84814200-84816000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr7:84814200-84816600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr7:84814200-84816600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:84814200-84816600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:84814200-84816600	Active TSS	Brain Cingulate Gyrus	brain
11	chr7:84814200-84816600	Active TSS	Stomach Smooth Muscle	stomach
12	chr7:84814200-84816800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:84814200-84816800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:84814200-84816800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
15	chr7:84814400-84816400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:84814400-84816400	Active TSS	Brain Angular Gyrus	brain
17	chr7:84814400-84816400	Active TSS	Fetal Intestine Small	intestine
18	chr7:84814400-84816400	Active TSS	Fetal Lung	lung
19	chr7:84814400-84816400	Active TSS	Fetal Stomach	stomach
20	chr7:84814400-84816400	Active TSS	NH-A	brain
21	chr7:84814400-84816400	Active TSS	NHDF-Ad	bronchial
22	chr7:84814400-84816400	Active TSS	NHEK	skin
23	chr7:84814400-84816600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:84814400-84816600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr7:84814400-84816600	Active TSS	Brain Substantia Nigra	brain
26	chr7:84814400-84816800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:84814400-84816800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:84814400-84816800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:84814400-84816800	Active TSS	Aorta	Aorta
30	chr7:84814400-84816800	Active TSS	Right Atrium	heart
31	chr7:84814400-84817000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:84814400-84817000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr7:84814400-84817000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:84814600-84815800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
35	chr7:84814600-84815800	Bivalent Enhancer	Liver	Liver
36	chr7:84814600-84816000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:84814600-84816200	Active TSS	Ovary	ovary
38	chr7:84814600-84816400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:84814600-84816400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:84814600-84816400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:84814600-84816400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:84814600-84816400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:84814600-84816400	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr7:84814600-84816400	Active TSS	HMEC	breast
45	chr7:84814600-84816400	Active TSS	NHLF	lung
46	chr7:84814600-84816600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr7:84814600-84816600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr7:84814600-84816600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:84814600-84816600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:84814600-84816600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links