Variant report

Variant	rs2734554
Chromosome Location	chr11:17736381-17736382
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11024386	0.86[EUR][1000 genomes]
rs12418323	0.86[EUR][1000 genomes]
rs12420653	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs16934767	1.00[JPT][hapmap]
rs2249104	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs2734555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34274198	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36128271	0.90[EUR][1000 genomes]
rs3858500	0.80[GIH][hapmap];1.00[JPT][hapmap]
rs3858510	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs3858511	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858512	0.86[EUR][1000 genomes]
rs4044329	1.00[JPT][hapmap]
rs4756911	0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1037585	chr11:17730586-17768346	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17735400-17736800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr11:17735600-17736800	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr11:17735600-17736800	Enhancers	HSMM	muscle
4	chr11:17735600-17737000	Enhancers	Fetal Heart	heart
5	chr11:17735800-17736400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:17735800-17736600	Enhancers	Right Ventricle	heart
7	chr11:17735800-17736800	Enhancers	Left Ventricle	heart
8	chr11:17736000-17736400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:17736000-17736800	Enhancers	Right Atrium	heart
10	chr11:17736200-17736600	Flanking Active TSS	HSMMtube	muscle
11	chr11:17736200-17736800	Enhancers	Psoas Muscle	Psoas
12	chr11:17736200-17736800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr11:17736200-17736800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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