Variant report

Variant	rs16934767
Chromosome Location	chr11:17896168-17896169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17896076..17898646-chr11:17904076..17906937,2	K562	blood:
2	chr11:17896076..17899590-chr11:17904076..17908190,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12420653	1.00[JPT][hapmap]
rs2249104	1.00[JPT][hapmap]
rs2734554	1.00[JPT][hapmap]
rs3858500	1.00[JPT][hapmap]
rs3858510	1.00[JPT][hapmap]
rs4044329	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4756911	1.00[JPT][hapmap]
rs58501231	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59141013	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61509203	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129561	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17838400-17971600	Weak transcription	Gastric	stomach
2	chr11:17863800-17939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:17864400-17944800	Weak transcription	Ovary	ovary
4	chr11:17864800-17899400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:17868600-17914000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:17869000-17909600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:17869000-17916400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:17872600-17926600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:17876400-17900200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:17876800-17914000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:17877800-17896400	Weak transcription	HSMM	muscle
12	chr11:17878200-17898600	Weak transcription	GM12878-XiMat	blood
13	chr11:17882800-17943800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:17883200-17896600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:17884400-17919800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:17885800-17939200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:17886000-17965200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:17888000-17897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:17888000-17897200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:17888000-17897200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:17888200-17915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:17888200-17916200	Weak transcription	HSMMtube	muscle
23	chr11:17889000-17898200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:17889400-17897000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:17889600-17898400	Weak transcription	Fetal Stomach	stomach
26	chr11:17890600-17898000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:17891200-17896200	Weak transcription	Psoas Muscle	Psoas
28	chr11:17891400-17907400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:17891800-17897200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:17892000-17900600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:17893000-17896200	Weak transcription	Brain Germinal Matrix	brain
32	chr11:17893000-17896400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:17893000-17901000	Strong transcription	Primary T cells from cord blood	blood
34	chr11:17893200-17897600	Strong transcription	Primary B cells from cord blood	blood
35	chr11:17893800-17897000	Weak transcription	NHEK	skin
36	chr11:17894200-17897400	Strong transcription	HepG2	liver
37	chr11:17894400-17897400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:17894600-17896400	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:17894600-17896800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr11:17894600-17897000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:17894600-17897400	Enhancers	Adipose Nuclei	Adipose
42	chr11:17894600-17899600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:17894600-17903000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:17894800-17896400	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr11:17894800-17896800	Enhancers	HUVEC	blood vessel
46	chr11:17894800-17898000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:17894800-17898800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:17895200-17896400	Strong transcription	Fetal Intestine Small	intestine
49	chr11:17895200-17896400	Enhancers	Right Ventricle	heart
50	chr11:17895200-17897000	Strong transcription	Primary B cells from peripheral blood	blood

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