Variant report

Variant	rs59141013
Chromosome Location	chr11:17892247-17892248
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17781047..17783603-chr11:17891179..17893367,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16934767	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4044329	0.91[ASN][1000 genomes]
rs58501231	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61509203	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17838400-17971600	Weak transcription	Gastric	stomach
2	chr11:17858800-17893200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:17862200-17895400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:17863800-17939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:17864400-17894600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:17864400-17944800	Weak transcription	Ovary	ovary
7	chr11:17864800-17899400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:17866000-17894600	Weak transcription	Adipose Nuclei	Adipose
9	chr11:17866200-17894600	Weak transcription	Liver	Liver
10	chr11:17866600-17895400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:17868400-17895200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:17868600-17894800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:17868600-17914000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:17868800-17894600	Weak transcription	Brain Anterior Caudate	brain
15	chr11:17868800-17894800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:17868800-17895200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:17869000-17895400	Weak transcription	Lung	lung
18	chr11:17869000-17909600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:17869000-17916400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:17872600-17926600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:17873000-17895200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:17876400-17900200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:17876600-17895200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr11:17876800-17914000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:17877800-17896400	Weak transcription	HSMM	muscle
26	chr11:17878000-17895400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:17878200-17898600	Weak transcription	GM12878-XiMat	blood
28	chr11:17879000-17894800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr11:17881800-17895200	Weak transcription	Brain Angular Gyrus	brain
30	chr11:17882000-17894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:17882600-17894600	Weak transcription	Pancreas	Pancrea
32	chr11:17882800-17943800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:17883200-17896600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:17884400-17894200	Weak transcription	HepG2	liver
35	chr11:17884400-17919800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:17885600-17893000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:17885800-17939200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:17886000-17965200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr11:17887800-17895200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:17887800-17895200	Weak transcription	Right Ventricle	heart
41	chr11:17887800-17895400	Weak transcription	Aorta	Aorta
42	chr11:17887800-17895400	Weak transcription	Spleen	Spleen
43	chr11:17887800-17895600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr11:17888000-17895000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:17888000-17897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:17888000-17897200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:17888000-17897200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:17888200-17915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:17888200-17916200	Weak transcription	HSMMtube	muscle
50	chr11:17889000-17898200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links