Variant report

Variant	rs2736353
Chromosome Location	chr8:11367038-11367039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11366501..11369054-chr8:11369431..11373497,4	K562	blood:
2	chr8:11366572..11369135-chr8:11369191..11372086,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf12-2	chr8:11366659-11367400	NONHSAT125062

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11250142	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1478895	0.81[CHB][hapmap]
rs1564267	0.81[CHB][hapmap]
rs1600249	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs17153385	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2251056	0.80[CHB][hapmap]
rs2252729	1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280805	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs2409781	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2618455	0.87[CHB][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2618456	0.87[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2618457	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2618458	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2618467	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2736344	0.81[CHB][hapmap]
rs2736346	0.83[JPT][hapmap]
rs2736354	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2736355	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2736356	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2736359	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2736360	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6993775	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73209286	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9694294	0.81[CHB][hapmap]
rs998682	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11353400-11367200	Enhancers	Fetal Thymus	thymus
2	chr8:11357400-11380000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr8:11364200-11367400	Enhancers	Primary B cells from cord blood	blood
4	chr8:11364400-11368800	Enhancers	Dnd41	blood
5	chr8:11364800-11372000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:11365000-11367400	Genic enhancers	GM12878-XiMat	blood
7	chr8:11365200-11368400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:11365400-11368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:11365400-11373400	Enhancers	NHEK	skin
10	chr8:11365600-11372000	Weak transcription	Spleen	Spleen
11	chr8:11365800-11368400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:11365800-11368400	Enhancers	HSMM	muscle
13	chr8:11365800-11374600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:11366000-11371200	Enhancers	Osteobl	bone
15	chr8:11366200-11368200	Enhancers	HSMMtube	muscle
16	chr8:11366200-11368400	Enhancers	NHDF-Ad	bronchial
17	chr8:11366200-11368800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:11366200-11369400	Enhancers	NH-A	brain
19	chr8:11366400-11368400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:11366400-11369400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:11366400-11369400	Enhancers	HMEC	breast
22	chr8:11366600-11369400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:11366600-11370000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:11366600-11375200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:11366800-11367200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:11366800-11367200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:11366800-11370600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:11367000-11368200	Enhancers	NHLF	lung
29	chr8:11367000-11373400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links