Variant report

Variant	rs2736360
Chromosome Location	chr8:11373467-11373468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11366501..11369054-chr8:11369431..11373497,4	K562	blood:
2	chr8:11322370..11324874-chr8:11373322..11375759,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154319	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11250141	0.81[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11250142	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11250143	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11990277	0.87[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11991127	0.83[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12674768	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12677903	0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1382566	0.88[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1478897	0.81[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs17153385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2021819	0.88[ASN][1000 genomes]
rs2248696	0.82[ASN][1000 genomes]
rs2248700	0.82[ASN][1000 genomes]
rs2248932	0.88[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2249259	0.82[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2252729	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2618435	0.87[ASN][1000 genomes]
rs2618437	0.87[ASN][1000 genomes]
rs2618455	0.87[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2618456	0.87[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2618457	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs2618458	0.82[EUR][1000 genomes]
rs2618478	0.85[MEX][hapmap]
rs2618479	0.85[MEX][hapmap]
rs2729934	0.86[ASN][1000 genomes]
rs2729935	0.86[ASN][1000 genomes]
rs2736353	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2736354	0.87[CEU][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.85[MEX][hapmap];0.82[EUR][1000 genomes]
rs2736355	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2736356	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2736359	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2898282	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4841546	0.83[ASN][1000 genomes]
rs4841550	0.82[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs57240873	0.89[ASN][1000 genomes]
rs58373594	0.89[ASN][1000 genomes]
rs62489135	0.85[ASN][1000 genomes]
rs62489136	0.84[ASN][1000 genomes]
rs62489137	0.85[ASN][1000 genomes]
rs6981617	0.82[ASN][1000 genomes]
rs6993775	0.84[CHD][hapmap];0.85[GIH][hapmap];0.81[ASN][1000 genomes]
rs7004267	0.80[ASN][1000 genomes]
rs7014565	0.87[CHB][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes]
rs73209286	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73209290	0.88[ASN][1000 genomes]
rs7814834	0.81[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs7844858	0.87[ASN][1000 genomes]
rs9329246	0.88[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs9657551	0.81[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2736360	FLJ10661	cis	cerebellum	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11357400-11380000	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr8:11365800-11374600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:11366600-11375200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:11368800-11374600	Enhancers	HSMM	muscle
5	chr8:11368800-11375800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:11370200-11375000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:11370600-11373600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:11370600-11375400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:11370800-11374600	Genic enhancers	Primary B cells from cord blood	blood
10	chr8:11371000-11373800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr8:11372000-11376000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:11372200-11386000	Weak transcription	Spleen	Spleen
13	chr8:11372400-11373600	Weak transcription	GM12878-XiMat	blood
14	chr8:11372400-11374800	Enhancers	HMEC	breast
15	chr8:11372600-11373600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:11372600-11373600	Enhancers	Fetal Thymus	thymus
17	chr8:11372600-11373600	Enhancers	HSMMtube	muscle
18	chr8:11372600-11373600	Enhancers	HUVEC	blood vessel
19	chr8:11372600-11373600	Enhancers	NH-A	brain
20	chr8:11372600-11374400	Enhancers	NHLF	lung
21	chr8:11372600-11375000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:11372800-11374400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:11372800-11374400	Enhancers	Osteobl	bone
24	chr8:11373000-11374400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:11373000-11376600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:11373200-11374000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:11373200-11374400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:11373400-11373600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:11373400-11373600	Bivalent Enhancer	Fetal Stomach	stomach
30	chr8:11373400-11373600	Flanking Active TSS	NHEK	skin
31	chr8:11373400-11374000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:11373400-11374000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:11373400-11374200	Flanking Active TSS	NHDF-Ad	bronchial
34	chr8:11373400-11374400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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