Variant report

Variant	rs1382566
Chromosome Location	chr8:11384841-11384842
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10903339	0.86[ASN][1000 genomes]
rs11250141	0.81[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11250142	0.82[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11250143	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11250144	0.83[CHB][hapmap]
rs11990277	0.82[CHD][hapmap];0.94[JPT][hapmap]
rs11991127	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12674768	0.90[JPT][hapmap]
rs12677903	1.00[JPT][hapmap]
rs1478897	0.84[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17153385	0.88[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs17153419	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs2021819	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248696	0.88[ASN][1000 genomes]
rs2248700	0.88[ASN][1000 genomes]
rs2248932	0.88[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2249259	0.94[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2618435	0.93[ASN][1000 genomes]
rs2618437	0.93[ASN][1000 genomes]
rs2618455	0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs2618456	0.85[ASN][1000 genomes]
rs2729934	0.93[ASN][1000 genomes]
rs2729935	0.93[ASN][1000 genomes]
rs2736354	0.82[CHD][hapmap]
rs2736356	0.85[ASN][1000 genomes]
rs2736359	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2736360	0.88[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2898282	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35451117	0.89[ASN][1000 genomes]
rs4366049	0.84[ASN][1000 genomes]
rs4841550	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs57240873	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58373594	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62489135	0.92[ASN][1000 genomes]
rs62489136	0.90[ASN][1000 genomes]
rs62489137	0.91[ASN][1000 genomes]
rs62489140	0.84[ASN][1000 genomes]
rs6981617	0.92[ASN][1000 genomes]
rs6993775	0.80[GIH][hapmap]
rs7004267	0.90[ASN][1000 genomes]
rs7014565	0.81[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs73209286	0.90[ASN][1000 genomes]
rs73209290	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814834	0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7828916	0.83[ASN][1000 genomes]
rs7844858	0.93[ASN][1000 genomes]
rs9329246	0.88[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9657551	0.81[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2762726	chr8:11384556-11386055	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11372200-11386000	Weak transcription	Spleen	Spleen
2	chr8:11380800-11385400	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr8:11382800-11385000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:11382800-11385000	Weak transcription	HMEC	breast
5	chr8:11382800-11386200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:11383000-11407000	Weak transcription	Dnd41	blood
7	chr8:11383400-11386000	Weak transcription	Fetal Thymus	thymus
8	chr8:11384400-11385400	Genic enhancers	Primary B cells from cord blood	blood
9	chr8:11384400-11385600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr8:11384400-11388000	ZNF genes & repeats	GM12878-XiMat	blood
11	chr8:11384600-11385600	Enhancers	NHEK	skin
12	chr8:11384800-11385000	Enhancers	Muscle Satellite Cultured Cells	--

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