Variant report

Variant	rs11250143
Chromosome Location	chr8:11377716-11377717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10903339	0.81[ASN][1000 genomes]
rs11250141	0.82[ASN][1000 genomes]
rs11250142	0.95[ASN][1000 genomes]
rs11990277	0.81[ASN][1000 genomes]
rs11991127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12674768	0.82[ASN][1000 genomes]
rs12677903	0.85[ASN][1000 genomes]
rs1382566	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1478897	0.85[ASN][1000 genomes]
rs17153385	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2021819	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2248696	0.83[ASN][1000 genomes]
rs2248700	0.83[ASN][1000 genomes]
rs2248932	0.87[ASN][1000 genomes]
rs2249259	0.89[ASN][1000 genomes]
rs2618435	0.88[ASN][1000 genomes]
rs2618437	0.88[ASN][1000 genomes]
rs2618455	0.87[ASN][1000 genomes]
rs2618456	0.87[ASN][1000 genomes]
rs2729934	0.87[ASN][1000 genomes]
rs2729935	0.87[ASN][1000 genomes]
rs2736356	0.87[ASN][1000 genomes]
rs2736359	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2736360	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2898282	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35451117	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4841546	0.80[ASN][1000 genomes]
rs4841550	0.87[ASN][1000 genomes]
rs57240873	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58373594	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62489135	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62489136	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62489137	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62489140	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6981617	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7004267	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7014565	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73209286	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73209290	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7814834	0.87[ASN][1000 genomes]
rs7844858	0.88[ASN][1000 genomes]
rs9329246	0.87[ASN][1000 genomes]
rs9657551	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11357400-11380000	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr8:11372200-11386000	Weak transcription	Spleen	Spleen
3	chr8:11374800-11381800	Weak transcription	HUVEC	blood vessel
4	chr8:11376200-11382000	Weak transcription	Fetal Thymus	thymus
5	chr8:11376600-11382200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:11376800-11382000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:11376800-11382200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:11377400-11379600	Genic enhancers	Primary B cells from cord blood	blood
9	chr8:11377400-11381200	Weak transcription	GM12878-XiMat	blood
10	chr8:11377400-11381800	Weak transcription	Osteobl	bone

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