Variant report

Variant	rs2736567
Chromosome Location	chr11:5338759-5338760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:5338640-5338790	SAEC	small airway:	n/a	n/a
2	POLR2A	chr11:5338630-5339135	K562	blood:	n/a	n/a
3	CTCF	chr11:5338598-5338853	K562	blood:	n/a	n/a
4	CEBPB	chr11:5338608-5338786	K562	blood:	n/a	n/a
5	RAD21	chr11:5338626-5338832	SK-N-SH_RA	brain:	n/a	n/a
6	CTCF	chr11:5338660-5338810	HCPEpiC	choroid plexus:	n/a	n/a
7	CEBPB	chr11:5338612-5338810	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr11:5338589-5338862	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr11:5338620-5338770	HMF	breast:	n/a	n/a
10	CTCF	chr11:5338620-5338770	BJ	skin:	n/a	n/a
11	CTCF	chr11:5338700-5338850	AG09319	gingival:	n/a	n/a
12	CTCF	chr11:5338646-5338787	K562	blood:	n/a	n/a
13	CTCF	chr11:5338646-5338812	LNCaP	prostate:	n/a	n/a
14	CTCF	chr11:5338640-5338790	AG09319	gingival:	n/a	n/a
15	CTCF	chr11:5338620-5338770	AG09309	skin:	n/a	n/a
16	CTCF	chr11:5338620-5338782	LNCaP	prostate:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:5337010..5339667-chr11:5367362..5370323,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10768783	0.85[ASN][1000 genomes]
rs11036742	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11036749	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11036801	0.88[CHB][hapmap]
rs12363009	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs35666233	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3898916	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4459335	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052750	chr11:5187571-5338802	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1037760	chr11:5228195-5338802	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv524400	chr11:5328361-5416622	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
5	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5330400-5345000	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links