Variant report

Variant	rs274302
Chromosome Location	chr10:25247473-25247474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:25011850..25014500-chr10:25246674..25248679,2	MCF-7	breast:
2	chr10:25245687..25248875-chr10:25261943..25265245,3	MCF-7	breast:
3	chr10:25245793..25250014-chr10:25304011..25307329,4	MCF-7	breast:
4	chr10:25245492..25247572-chr10:25252879..25256306,3	K562	blood:
5	chr10:25011700..25014356-chr10:25245305..25247951,2	K562	blood:
6	chr10:25242420..25244557-chr10:25246178..25248429,2	MCF-7	breast:
7	chr10:25245492..25247955-chr10:25250126..25255906,6	K562	blood:
8	chr10:25183976..25186724-chr10:25246241..25248282,2	K562	blood:
9	chr10:25246877..25249016-chr10:25275912..25277898,2	K562	blood:
10	chr10:25246322..25248329-chr10:25271601..25273321,2	K562	blood:
11	chr10:25247331..25249191-chr10:25250892..25252759,2	MCF-7	breast:
12	chr10:25242028..25244551-chr10:25245660..25248271,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151023	Chromatin interaction
ENSG00000107863	Chromatin interaction
ENSG00000273107	Chromatin interaction
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs185669	0.82[JPT][hapmap]
rs200730	0.90[ASN][1000 genomes]
rs274296	0.94[CEU][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap]
rs274300	0.85[AMR][1000 genomes]
rs274303	0.87[ASN][1000 genomes]
rs274304	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs274306	0.87[ASN][1000 genomes]
rs274308	0.87[ASN][1000 genomes]
rs274309	0.87[ASN][1000 genomes]
rs274312	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25242200-25247800	Weak transcription	Aorta	Aorta
2	chr10:25242200-25247800	Weak transcription	Left Ventricle	heart
3	chr10:25242200-25248000	Weak transcription	Psoas Muscle	Psoas
4	chr10:25242400-25251400	Weak transcription	Liver	Liver
5	chr10:25242400-25252800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:25242600-25247600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:25242600-25249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:25242800-25247600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:25242800-25247800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:25242800-25247800	Weak transcription	Right Atrium	heart
11	chr10:25242800-25251400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:25242800-25251600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:25243000-25247600	Weak transcription	Fetal Brain Male	brain
14	chr10:25243000-25251400	Weak transcription	Fetal Intestine Small	intestine
15	chr10:25243200-25247600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:25243200-25247600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:25243200-25247600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:25245600-25248400	Enhancers	HMEC	breast
19	chr10:25245600-25248600	Enhancers	Hela-S3	cervix
20	chr10:25245800-25248400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:25245800-25248600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:25246000-25247800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:25246000-25247800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:25246200-25247600	Weak transcription	Brain Substantia Nigra	brain
25	chr10:25246400-25248400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:25246400-25248600	Enhancers	Fetal Stomach	stomach
27	chr10:25246400-25248600	Enhancers	HSMM	muscle
28	chr10:25246600-25247800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:25246600-25248200	Enhancers	NHEK	skin
30	chr10:25246800-25247600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:25246800-25247600	Enhancers	Adipose Nuclei	Adipose
32	chr10:25246800-25247600	Enhancers	Colon Smooth Muscle	Colon
33	chr10:25246800-25247600	Flanking Active TSS	A549	lung
34	chr10:25246800-25248000	Enhancers	Placenta Amnion	Placenta Amnion
35	chr10:25246800-25248200	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr10:25247000-25247600	Enhancers	Rectal Smooth Muscle	rectum
37	chr10:25247000-25247800	Active TSS	Brain Anterior Caudate	brain
38	chr10:25247000-25248000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:25247000-25248200	Flanking Active TSS	NH-A	brain
40	chr10:25247000-25249200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:25247200-25247800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:25247200-25248000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr10:25247200-25248200	Active TSS	Brain Cingulate Gyrus	brain
44	chr10:25247200-25248200	Enhancers	Stomach Mucosa	stomach
45	chr10:25247200-25248200	Flanking Active TSS	Osteobl	bone
46	chr10:25247200-25248400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:25247200-25248400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:25247200-25248400	Enhancers	Fetal Brain Female	brain
49	chr10:25247200-25248400	Enhancers	Fetal Kidney	kidney
50	chr10:25247200-25248400	Flanking Active TSS	Fetal Lung	lung

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