Variant report

Variant	rs274296
Chromosome Location	chr10:25236223-25236224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25230623..25233059-chr10:25234068..25237014,2	K562	blood:
2	chr10:25235302..25239090-chr10:25240000..25243649,4	MCF-7	breast:
3	chr10:25228270..25233826-chr10:25234068..25237911,6	K562	blood:

Variant related genes	Relation type
ENSG00000273107	Chromatin interaction
ENSG00000099256	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10741071	0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs10741072	0.85[CHD][hapmap];0.82[ASN][1000 genomes]
rs10764513	0.95[ASN][1000 genomes]
rs10828728	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828731	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11014318	0.83[ASN][1000 genomes]
rs11014320	0.83[ASN][1000 genomes]
rs185669	0.89[CHD][hapmap];0.84[ASN][1000 genomes]
rs2035888	0.85[CHD][hapmap];0.84[ASN][1000 genomes]
rs2478091	0.81[ASN][1000 genomes]
rs274295	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274297	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs274299	0.88[ASN][1000 genomes]
rs274300	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs274302	0.94[CEU][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap]
rs3748223	0.83[CHD][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:25210400-25236600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:25211400-25239800	Weak transcription	Fetal Kidney	kidney
4	chr10:25215800-25240000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:25218800-25236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:25219000-25236600	Weak transcription	Ovary	ovary
7	chr10:25219200-25240000	Weak transcription	Dnd41	blood
8	chr10:25224200-25236400	Weak transcription	Brain Germinal Matrix	brain
9	chr10:25225400-25240000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:25225400-25240000	Weak transcription	Fetal Brain Female	brain
11	chr10:25226200-25239800	Weak transcription	Fetal Lung	lung
12	chr10:25226400-25239200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:25227600-25236600	Weak transcription	Pancreas	Pancrea
14	chr10:25228200-25239800	Weak transcription	Fetal Stomach	stomach
15	chr10:25229800-25236600	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:25232600-25239800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:25232800-25240000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:25233600-25237800	Enhancers	Brain Anterior Caudate	brain
19	chr10:25233800-25236600	Enhancers	Brain Hippocampus Middle	brain
20	chr10:25234200-25236400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:25234200-25236400	Weak transcription	Small Intestine	intestine
22	chr10:25234200-25237200	Weak transcription	Hela-S3	cervix
23	chr10:25234200-25240400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:25234200-25240400	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:25234200-25240600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:25234200-25240600	Weak transcription	Right Atrium	heart
27	chr10:25234400-25236600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:25234400-25239800	Weak transcription	A549	lung
29	chr10:25234400-25239800	Weak transcription	HepG2	liver
30	chr10:25234400-25239800	Weak transcription	K562	blood
31	chr10:25234400-25240600	Weak transcription	Adipose Nuclei	Adipose
32	chr10:25234600-25239800	Weak transcription	Fetal Intestine Small	intestine
33	chr10:25234800-25238000	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr10:25235400-25236600	Enhancers	Brain Cingulate Gyrus	brain
35	chr10:25235400-25237600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:25235400-25240400	Enhancers	Brain Substantia Nigra	brain
37	chr10:25235600-25237200	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr10:25235800-25237000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:25235800-25237200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:25235800-25237200	Enhancers	HMEC	breast
41	chr10:25235800-25237400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:25235800-25237400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:25235800-25237600	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr10:25235800-25237600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:25235800-25238000	Enhancers	Brain Angular Gyrus	brain
46	chr10:25236000-25236400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:25236000-25236600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr10:25236000-25237000	Enhancers	Osteobl	bone
49	chr10:25236000-25237200	Enhancers	GM12878-XiMat	blood
50	chr10:25236000-25237200	Enhancers	HUVEC	blood vessel

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