Variant report

Variant	rs2745454
Chromosome Location	chr6:4072128-4072129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4067254..4070253-chr6:4071525..4075483,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11751316	0.85[TSI][hapmap]
rs11759470	0.87[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs13196680	0.87[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs13197380	0.87[CEU][hapmap]
rs13200044	0.87[CEU][hapmap]
rs13207795	0.85[TSI][hapmap]
rs13209389	0.87[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs13210391	0.85[CEU][hapmap]
rs1883630	1.00[EUR][1000 genomes]
rs2143397	0.96[EUR][1000 genomes]
rs715165	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv462615	chr6:4052383-4096678	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv600860	chr6:4052383-4096678	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4058200-4075000	Weak transcription	Small Intestine	intestine
2	chr6:4063000-4073000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:4063400-4078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:4063800-4073200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:4064000-4077600	Weak transcription	Brain Anterior Caudate	brain
6	chr6:4065200-4077400	Weak transcription	Brain Substantia Nigra	brain
7	chr6:4066000-4077400	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:4066200-4073000	Weak transcription	HUVEC	blood vessel
9	chr6:4066200-4077400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:4066400-4077200	Weak transcription	Adipose Nuclei	Adipose
11	chr6:4066400-4077400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:4066600-4072400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:4066600-4077400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:4066800-4073200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:4066800-4073200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:4066800-4079600	Weak transcription	NHLF	lung
17	chr6:4067000-4082400	Weak transcription	Brain Germinal Matrix	brain
18	chr6:4068600-4074800	Weak transcription	HepG2	liver
19	chr6:4071600-4072200	Enhancers	K562	blood
20	chr6:4071800-4074000	Weak transcription	Pancreas	Pancrea
21	chr6:4071800-4075200	Weak transcription	Stomach Mucosa	stomach
22	chr6:4072000-4072200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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