The 2.0 version of rSNPBase

Variant report

Variant rs2746046
Chromosome Location chr1:159171348-159171349
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:159158400-159174000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
2 chr1:159158800-159177600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:159158800-159177800 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:159158800-159188800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:159159600-159173200 Strong transcription Fetal Brain Female brain
6 chr1:159163000-159173800 Weak transcription Fetal Brain Male brain
7 chr1:159164200-159172600 Strong transcription Brain Germinal Matrix brain
8 chr1:159168000-159174000 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr1:159168000-159177600 Weak transcription H1 Cell Line embryonic stem cell
10 chr1:159168400-159171800 Weak transcription Brain Cingulate Gyrus brain
11 chr1:159168400-159177600 Weak transcription Brain Angular Gyrus brain
12 chr1:159169600-159172400 Enhancers Fetal Thymus thymus
13 chr1:159170200-159171400 Weak transcription K562 blood
14 chr1:159170200-159172400 Enhancers Primary T cells from cord blood blood
15 chr1:159170200-159172400 Enhancers Primary T killer naive cells fromperipheralblood blood
16 chr1:159170400-159172400 Enhancers Primary monocytes fromperipheralblood blood
17 chr1:159170400-159172400 Enhancers Monocytes-CD14+_RO01746 blood
18 chr1:159170400-159173400 Weak transcription Fetal Stomach stomach
19 chr1:159170400-159173600 Weak transcription Brain Anterior Caudate brain
20 chr1:159170400-159174200 Weak transcription Brain Inferior Temporal Lobe brain
21 chr1:159170400-159177800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:159170600-159171400 Enhancers Primary hematopoietic stem cells blood
23 chr1:159170800-159174400 Enhancers Lung lung
24 chr1:159170800-159177600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:159171000-159171800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
26 chr1:159171000-159171800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr1:159171000-159171800 Active TSS Skeletal Muscle Female skeletal muscle
28 chr1:159171000-159172000 Enhancers Primary neutrophils fromperipheralblood blood
29 chr1:159171000-159172200 Bivalent Enhancer Primary T cells fromperipheralblood blood
30 chr1:159171000-159172200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr1:159171000-159173400 Bivalent Enhancer Placenta Placenta
32 chr1:159171200-159171400 Bivalent Enhancer Primary mononuclear cells fromperipheralblood Blood
33 chr1:159171200-159171400 Enhancers Brain Hippocampus Middle brain
34 chr1:159171200-159171400 Enhancers Esophagus oesophagus
35 chr1:159171200-159171800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr1:159171200-159171800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
37 chr1:159171200-159171800 Flanking Active TSS Spleen Spleen
38 chr1:159171200-159172000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr1:159171200-159172000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
40 chr1:159171200-159172200 Bivalent/Poised TSS Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015