Variant report

Variant	rs2746170
Chromosome Location	chr6:38720658-38720659
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1018437	0.80[JPT][hapmap]
rs1033525	0.85[ASN][1000 genomes]
rs1033526	0.85[ASN][1000 genomes]
rs1157884	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs1614699	0.86[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.85[LWK][hapmap]
rs1678638	0.80[JPT][hapmap]
rs1678657	0.86[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.85[LWK][hapmap]
rs1678661	0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1678669	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs1678675	0.86[CHB][hapmap]
rs1678717	0.80[JPT][hapmap]
rs1678718	0.80[JPT][hapmap]
rs1678725	0.80[JPT][hapmap]
rs1678742	0.80[JPT][hapmap]
rs1738177	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1738184	0.80[JPT][hapmap]
rs1738192	0.80[JPT][hapmap]
rs1738239	0.80[JPT][hapmap]
rs1738241	0.80[JPT][hapmap]
rs1738243	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs1738247	0.80[JPT][hapmap]
rs1738263	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2206860	0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2448399	0.92[ASN][1000 genomes]
rs4386804	0.80[JPT][hapmap]
rs4391252	0.80[JPT][hapmap]
rs4443498	0.80[JPT][hapmap]
rs4571559	0.80[JPT][hapmap]
rs4590258	0.80[JPT][hapmap]
rs4711558	0.80[JPT][hapmap]
rs4714193	0.80[JPT][hapmap]
rs6458080	0.80[JPT][hapmap]
rs6458081	0.80[JPT][hapmap]
rs6931736	0.80[JPT][hapmap]
rs769064	0.81[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs862422	0.80[JPT][hapmap]
rs862425	0.80[JPT][hapmap]
rs862427	0.80[JPT][hapmap]
rs9296265	0.80[JPT][hapmap]
rs9357290	0.80[JPT][hapmap]
rs9366982	0.80[JPT][hapmap]
rs9380789	0.80[JPT][hapmap]
rs9380796	0.80[JPT][hapmap]
rs9380799	0.80[JPT][hapmap]
rs9394531	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9394550	0.80[JPT][hapmap]
rs982705	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2746170	GLO1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38706200-38738600	Weak transcription	K562	blood
2	chr6:38719400-38722400	Weak transcription	HMEC	breast
3	chr6:38719400-38722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:38719800-38722800	Weak transcription	Fetal Kidney	kidney

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