Variant report

Variant	rs1738184
Chromosome Location	chr6:38820758-38820759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38819628..38821796-chr6:38823200..38825127,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1018437	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1157884	1.00[JPT][hapmap]
rs1614699	0.93[JPT][hapmap]
rs1678638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1678640	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1678657	0.93[JPT][hapmap]
rs1678669	1.00[JPT][hapmap]
rs1678675	0.92[JPT][hapmap]
rs1678717	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1678718	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1678725	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1678727	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1678742	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1738177	0.80[JPT][hapmap]
rs1738192	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1738199	0.91[ASN][1000 genomes]
rs1738203	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1738220	0.82[JPT][hapmap]
rs1738231	0.82[JPT][hapmap]
rs1738239	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1738240	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs1738241	1.00[JPT][hapmap]
rs1738243	1.00[JPT][hapmap]
rs1738247	1.00[JPT][hapmap]
rs1738263	0.93[JPT][hapmap]
rs2395709	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2746170	0.80[JPT][hapmap]
rs35696175	0.85[ASN][1000 genomes]
rs4286777	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4380739	0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs4386804	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4391252	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4443498	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4571559	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4590258	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4711558	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4711559	0.85[ASN][1000 genomes]
rs4714193	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6458079	0.85[ASN][1000 genomes]
rs6458080	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6458081	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6931736	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs769064	0.80[JPT][hapmap]
rs7746153	0.85[ASN][1000 genomes]
rs7757460	0.92[ASN][1000 genomes]
rs862422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs862425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs862427	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs862438	0.90[CHB][hapmap]
rs862439	0.89[CHB][hapmap]
rs9296265	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9296268	0.90[CHB][hapmap]
rs9349100	0.92[ASN][1000 genomes]
rs9357290	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9366982	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9369087	0.94[ASN][1000 genomes]
rs9369089	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9380787	0.94[ASN][1000 genomes]
rs9380788	0.83[ASN][1000 genomes]
rs9380789	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9380791	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs9380795	0.92[ASN][1000 genomes]
rs9380796	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9380798	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9380799	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9394531	0.80[JPT][hapmap]
rs9394544	0.93[ASN][1000 genomes]
rs9394547	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9394550	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs982705	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs984523	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38804600-38821000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:38812600-38821000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:38819800-38821200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:38820000-38820800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:38820000-38821000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:38820600-38821000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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