Variant report

Variant	rs4711559
Chromosome Location	chr6:38844867-38844868
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38838915..38841250-chr6:38844804..38847506,2	MCF-7	breast:
2	chr6:38843131..38846094-chr6:38848910..38851471,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1018437	0.85[ASN][1000 genomes]
rs1564377	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1678640	0.87[ASN][1000 genomes]
rs1678742	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1738184	0.85[ASN][1000 genomes]
rs1738199	0.81[ASN][1000 genomes]
rs2061907	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2179711	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2179712	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2179713	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34625234	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35696175	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4302660	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4380739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4443498	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4501424	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4711558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396413	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6458073	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6458074	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6458075	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6458076	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6458077	0.83[EUR][1000 genomes]
rs6458078	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6458079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928952	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6934064	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7746153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748684	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7757460	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7772148	0.84[EUR][1000 genomes]
rs862427	0.93[ASN][1000 genomes]
rs9296265	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349100	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9366982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369085	0.82[EUR][1000 genomes]
rs9369087	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380787	0.84[ASN][1000 genomes]
rs9380789	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9380795	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9394544	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394545	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38840200-38845400	Enhancers	Fetal Thymus	thymus
2	chr6:38842200-38845400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:38842200-38845800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:38842800-38845400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:38843400-38845400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:38843400-38845600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:38843600-38845000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:38843600-38845400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr6:38843600-38845400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:38843600-38845400	Enhancers	Dnd41	blood
11	chr6:38843800-38845000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:38843800-38845200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:38843800-38845200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:38843800-38845200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:38843800-38845200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:38843800-38845200	Enhancers	Adipose Nuclei	Adipose
17	chr6:38843800-38845400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:38843800-38845400	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:38843800-38845800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:38844000-38845000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:38844000-38845000	Flanking Active TSS	Thymus	Thymus
22	chr6:38844000-38845200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:38844200-38845200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:38844600-38845400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:38844800-38845400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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