Variant report

Variant	rs2753120
Chromosome Location	chr6:27155298-27155299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27154198..27156038-chr6:27159087..27161685,2	MCF-7	breast:
2	chr6:27148219..27154668-chr6:27154722..27158254,9	K562	blood:
3	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:
4	chr6:27154554..27158026-chr6:27757603..27761465,4	K562	blood:
5	chr6:27113069..27114668-chr6:27153428..27155363,2	K562	blood:
6	chr6:27155042..27157581-chr6:27762343..27765282,2	K562	blood:
7	chr6:27150672..27153341-chr6:27153761..27155795,3	MCF-7	breast:
8	chr6:27153641..27158263-chr6:27858563..27861801,5	K562	blood:
9	chr6:27155262..27157566-chr6:27266020..27269001,2	K562	blood:
10	chr6:27114727..27117926-chr6:27154560..27156609,3	K562	blood:
11	chr6:27114939..27117742-chr6:27153749..27157823,5	K562	blood:
12	chr6:27154833..27157823-chr6:27782934..27785900,2	K562	blood:
13	chr6:27154260..27155926-chr6:27167713..27170180,2	K562	blood:
14	chr6:27150639..27152459-chr6:27154596..27157395,2	MCF-7	breast:
15	chr6:27154842..27156986-chr6:27301919..27304257,2	K562	blood:
16	chr6:27154865..27156812-chr6:27464410..27466083,2	K562	blood:
17	chr6:27154773..27157322-chr6:27634142..27636330,2	MCF-7	breast:
18	chr6:27130956..27132580-chr6:27154818..27157126,2	K562	blood:
19	chr6:27130515..27132785-chr6:27154818..27157852,3	K562	blood:
20	chr6:27155275..27158320-chr6:27568064..27571527,3	K562	blood:
21	chr6:27154220..27156812-chr6:27776425..27779440,4	K562	blood:
22	chr6:27145758..27149060-chr6:27154386..27156904,3	MCF-7	breast:
23	chr6:27154579..27158488-chr6:27757538..27761648,4	MCF-7	breast:
24	chr6:27143412..27146140-chr6:27152536..27156532,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184825	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1102558	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1102559	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60266855	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs858967	0.82[ASN][1000 genomes]
rs858968	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs858969	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs858970	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs858972	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs858973	0.81[EUR][1000 genomes]
rs858974	0.80[ASN][1000 genomes]
rs858976	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27146600-27155800	Weak transcription	Spleen	Spleen
2	chr6:27146800-27155400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:27147000-27155600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:27154400-27155400	Flanking Active TSS	K562	blood
5	chr6:27154800-27155400	Enhancers	Fetal Intestine Small	intestine
6	chr6:27155000-27155400	Bivalent Enhancer	HepG2	liver
7	chr6:27155000-27155600	Enhancers	Stomach Mucosa	stomach
8	chr6:27155000-27157000	Active TSS	Right Atrium	heart
9	chr6:27155200-27155400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:27155200-27155400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:27155200-27155400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:27155200-27155400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:27155200-27155400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:27155200-27155400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:27155200-27155400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:27155200-27155400	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:27155200-27155400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:27155200-27155400	Enhancers	Fetal Intestine Large	intestine
19	chr6:27155200-27155400	Weak transcription	Fetal Lung	lung
20	chr6:27155200-27155400	Enhancers	Small Intestine	intestine
21	chr6:27155200-27155400	Enhancers	HMEC	breast
22	chr6:27155200-27155600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:27155200-27155600	Enhancers	Fetal Thymus	thymus
24	chr6:27155200-27155600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:27155200-27155600	Enhancers	Dnd41	blood
26	chr6:27155200-27156400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:27155200-27156600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:27155200-27156800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:27155200-27156800	Active TSS	Osteobl	bone
30	chr6:27155200-27157000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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