Variant report

Variant	rs858974
Chromosome Location	chr6:27155474-27155475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27154198..27156038-chr6:27159087..27161685,2	MCF-7	breast:
2	chr6:27155406..27158362-chr6:27858378..27860998,5	K562	blood:
3	chr6:27148219..27154668-chr6:27154722..27158254,9	K562	blood:
4	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:
5	chr6:27154554..27158026-chr6:27757603..27761465,4	K562	blood:
6	chr6:27155042..27157581-chr6:27762343..27765282,2	K562	blood:
7	chr6:27150672..27153341-chr6:27153761..27155795,3	MCF-7	breast:
8	chr6:27153641..27158263-chr6:27858563..27861801,5	K562	blood:
9	chr6:27155262..27157566-chr6:27266020..27269001,2	K562	blood:
10	chr6:27114727..27117926-chr6:27154560..27156609,3	K562	blood:
11	chr6:27114939..27117742-chr6:27153749..27157823,5	K562	blood:
12	chr6:27154833..27157823-chr6:27782934..27785900,2	K562	blood:
13	chr6:27154260..27155926-chr6:27167713..27170180,2	K562	blood:
14	chr6:27150639..27152459-chr6:27154596..27157395,2	MCF-7	breast:
15	chr6:27154842..27156986-chr6:27301919..27304257,2	K562	blood:
16	chr6:27154865..27156812-chr6:27464410..27466083,2	K562	blood:
17	chr6:27154773..27157322-chr6:27634142..27636330,2	MCF-7	breast:
18	chr6:27155324..27157508-chr6:27634451..27636223,2	K562	blood:
19	chr6:27130956..27132580-chr6:27154818..27157126,2	K562	blood:
20	chr6:27130515..27132785-chr6:27154818..27157852,3	K562	blood:
21	chr6:27155275..27158320-chr6:27568064..27571527,3	K562	blood:
22	chr6:27154220..27156812-chr6:27776425..27779440,4	K562	blood:
23	chr6:27145758..27149060-chr6:27154386..27156904,3	MCF-7	breast:
24	chr6:27154579..27158488-chr6:27757538..27761648,4	MCF-7	breast:
25	chr6:27143412..27146140-chr6:27152536..27156532,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184825	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000233224	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1102558	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1102560	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1102563	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1102564	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1102565	0.88[ASN][1000 genomes]
rs1156086	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2753120	0.80[ASN][1000 genomes]
rs3800309	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4236043	0.90[AFR][1000 genomes]
rs4713069	0.83[ASN][1000 genomes]
rs4713074	0.90[AFR][1000 genomes]
rs5030956	0.90[AFR][1000 genomes]
rs6902268	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6916555	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6917311	0.91[AFR][1000 genomes]
rs6940384	0.88[AFR][1000 genomes]
rs858967	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs858968	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs858969	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs858970	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs858973	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs858976	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs858977	0.85[ASN][1000 genomes]
rs858980	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs858982	0.82[EUR][1000 genomes]
rs9468009	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9468010	0.84[AFR][1000 genomes]
rs9468013	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs996247	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv3356749	chr6:27155446-27163661	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27146600-27155800	Weak transcription	Spleen	Spleen
2	chr6:27147000-27155600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:27155000-27155600	Enhancers	Stomach Mucosa	stomach
4	chr6:27155000-27157000	Active TSS	Right Atrium	heart
5	chr6:27155200-27155600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:27155200-27155600	Enhancers	Fetal Thymus	thymus
7	chr6:27155200-27155600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:27155200-27155600	Enhancers	Dnd41	blood
9	chr6:27155200-27156400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:27155200-27156600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:27155200-27156800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:27155200-27156800	Active TSS	Osteobl	bone
13	chr6:27155200-27157000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:27155400-27155600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:27155400-27155600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr6:27155400-27155600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:27155400-27155600	Active TSS	Primary B cells from cord blood	blood
18	chr6:27155400-27155600	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:27155400-27155600	Active TSS	Primary T cells from cord blood	blood
20	chr6:27155400-27155600	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:27155400-27155600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:27155400-27155600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr6:27155400-27155600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:27155400-27155600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:27155400-27155600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:27155400-27155600	Enhancers	Liver	Liver
27	chr6:27155400-27155600	Enhancers	Brain Angular Gyrus	brain
28	chr6:27155400-27155600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:27155400-27155600	Enhancers	Brain Substantia Nigra	brain
30	chr6:27155400-27155600	Enhancers	Fetal Heart	heart
31	chr6:27155400-27155600	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr6:27155400-27155600	Enhancers	Placenta	Placenta
33	chr6:27155400-27155600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:27155400-27155600	Flanking Active TSS	GM12878-XiMat	blood
35	chr6:27155400-27155600	Enhancers	Hela-S3	cervix
36	chr6:27155400-27155600	Bivalent/Poised TSS	HepG2	liver
37	chr6:27155400-27155600	Enhancers	NHEK	skin
38	chr6:27155400-27155800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr6:27155400-27155800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:27155400-27155800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr6:27155400-27155800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:27155400-27155800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr6:27155400-27155800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:27155400-27155800	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr6:27155400-27155800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr6:27155400-27155800	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr6:27155400-27155800	Active TSS	Rectal Smooth Muscle	rectum
48	chr6:27155400-27155800	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr6:27155400-27156000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
50	chr6:27155400-27156000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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