Variant report

Variant	rs858982
Chromosome Location	chr6:27173078-27173079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27171643..27174637-chr6:27189780..27192131,2	K562	blood:
2	chr6:27172666..27175265-chr6:27265465..27267285,2	K562	blood:
3	chr6:27171746..27174029-chr6:27180862..27184062,3	K562	blood:
4	chr6:27164367..27166691-chr6:27171692..27173483,2	MCF-7	breast:
5	chr6:27113325..27119101-chr6:27172973..27177922,8	K562	blood:
6	chr6:27172465..27174162-chr6:27404075..27406458,2	K562	blood:
7	chr6:27162610..27164330-chr6:27172522..27175063,2	K562	blood:
8	chr6:27164413..27166775-chr6:27172734..27175506,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1102558	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1102560	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1102563	0.85[EUR][1000 genomes]
rs1102564	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1156086	0.80[ASN][1000 genomes]
rs6902268	0.80[ASN][1000 genomes]
rs6916555	0.80[ASN][1000 genomes]
rs858967	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs858968	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs858969	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs858970	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs858973	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs858974	0.82[EUR][1000 genomes]
rs858976	0.90[EUR][1000 genomes]
rs858980	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27172000-27173200	Weak transcription	K562	blood
2	chr6:27173000-27173200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:27173000-27173200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:27173000-27173200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:27173000-27173200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:27173000-27173200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:27173000-27173200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:27173000-27173400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
9	chr6:27173000-27173400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:27173000-27173400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:27173000-27173400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:27173000-27173600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:27173000-27174000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr6:27173000-27174200	Active TSS	H1 Cell Line	embryonic stem cell
15	chr6:27173000-27174200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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