Variant report

Variant	rs1102560
Chromosome Location	chr6:27156273-27156274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27155406..27158362-chr6:27858378..27860998,5	K562	blood:
2	chr6:27155655..27157705-chr6:27862759..27864468,2	K562	blood:
3	chr6:27148219..27154668-chr6:27154722..27158254,9	K562	blood:
4	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:
5	chr6:27154554..27158026-chr6:27757603..27761465,4	K562	blood:
6	chr6:27155042..27157581-chr6:27762343..27765282,2	K562	blood:
7	chr6:27153641..27158263-chr6:27858563..27861801,5	K562	blood:
8	chr6:27155262..27157566-chr6:27266020..27269001,2	K562	blood:
9	chr6:27114727..27117926-chr6:27154560..27156609,3	K562	blood:
10	chr6:27114939..27117742-chr6:27153749..27157823,5	K562	blood:
11	chr6:27154833..27157823-chr6:27782934..27785900,2	K562	blood:
12	chr6:27150639..27152459-chr6:27154596..27157395,2	MCF-7	breast:
13	chr6:27154842..27156986-chr6:27301919..27304257,2	K562	blood:
14	chr6:27154865..27156812-chr6:27464410..27466083,2	K562	blood:
15	chr6:27155528..27159493-chr6:27776465..27779576,3	K562	blood:
16	chr6:27154773..27157322-chr6:27634142..27636330,2	MCF-7	breast:
17	chr6:27155324..27157508-chr6:27634451..27636223,2	K562	blood:
18	chr6:27130956..27132580-chr6:27154818..27157126,2	K562	blood:
19	chr6:27130515..27132785-chr6:27154818..27157852,3	K562	blood:
20	chr6:27155275..27158320-chr6:27568064..27571527,3	K562	blood:
21	chr6:27154220..27156812-chr6:27776425..27779440,4	K562	blood:
22	chr6:27145758..27149060-chr6:27154386..27156904,3	MCF-7	breast:
23	chr6:27154579..27158488-chr6:27757538..27761648,4	MCF-7	breast:
24	chr6:27143412..27146140-chr6:27152536..27156532,5	K562	blood:
25	chr6:27156028..27157789-chr6:27774192..27775722,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000217862	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1102558	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1102559	0.83[EUR][1000 genomes]
rs1102563	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1102564	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1102565	0.92[ASN][1000 genomes]
rs60266855	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs858967	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs858968	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs858969	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs858970	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs858972	0.83[EUR][1000 genomes]
rs858973	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs858974	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs858976	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs858977	0.88[ASN][1000 genomes]
rs858980	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs858982	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv3356749	chr6:27155446-27163661	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27155000-27157000	Active TSS	Right Atrium	heart
2	chr6:27155200-27156400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:27155200-27156600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:27155200-27156800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:27155200-27156800	Active TSS	Osteobl	bone
6	chr6:27155200-27157000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:27155400-27156800	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:27155400-27156800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:27155400-27156800	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr6:27155400-27156800	Active TSS	Muscle Satellite Cultured Cells	--
11	chr6:27155400-27156800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:27155400-27156800	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr6:27155400-27156800	Active TSS	Colon Smooth Muscle	Colon
14	chr6:27155400-27156800	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr6:27155400-27156800	Active TSS	Fetal Intestine Large	intestine
16	chr6:27155400-27156800	Active TSS	Fetal Intestine Small	intestine
17	chr6:27155400-27156800	Active TSS	Fetal Lung	lung
18	chr6:27155400-27156800	Active TSS	Fetal Stomach	stomach
19	chr6:27155400-27156800	Active TSS	Ovary	ovary
20	chr6:27155400-27156800	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr6:27155400-27156800	Active TSS	Thymus	Thymus
22	chr6:27155400-27156800	Active TSS	HMEC	breast
23	chr6:27155400-27156800	Active TSS	NHDF-Ad	bronchial
24	chr6:27155400-27156800	Active TSS	NHLF	lung
25	chr6:27155400-27157000	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:27155400-27157000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:27155400-27157000	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr6:27155400-27157000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:27155400-27157000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:27155400-27157000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:27155400-27157000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:27155400-27157000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:27155400-27157000	Active TSS	Fetal Kidney	kidney
34	chr6:27155400-27157000	Active TSS	K562	blood
35	chr6:27155400-27157200	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr6:27155600-27156400	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr6:27155600-27156400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr6:27155600-27156400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
39	chr6:27155600-27156400	Flanking Active TSS	Fetal Thymus	thymus
40	chr6:27155600-27156600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr6:27155600-27156600	Flanking Active TSS	Primary B cells from peripheral blood	blood
42	chr6:27155600-27156600	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr6:27155600-27156600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:27155600-27156600	Active TSS	Gastric	stomach
45	chr6:27155600-27156600	Active TSS	Lung	lung
46	chr6:27155600-27156600	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr6:27155600-27156600	Flanking Bivalent TSS/Enh	HepG2	liver
48	chr6:27155600-27156800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr6:27155600-27156800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:27155600-27156800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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