Variant report

Variant	rs27532
Chromosome Location	chr5:58561584-58561585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10514864	1.00[CEU][hapmap]
rs12658429	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1445947	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1457110	1.00[CEU][hapmap]
rs154223	1.00[CEU][hapmap]
rs16889611	1.00[CEU][hapmap]
rs16889682	1.00[CEU][hapmap]
rs16889696	1.00[CEU][hapmap]
rs16889743	1.00[CEU][hapmap]
rs16889796	1.00[CEU][hapmap]
rs16889846	1.00[CEU][hapmap]
rs17589745	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs27185	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6450516	1.00[CEU][hapmap]
rs6450518	1.00[CEU][hapmap]
rs6872808	1.00[CEU][hapmap]
rs6888644	1.00[CEU][hapmap]
rs6889851	1.00[CEU][hapmap]
rs6895685	1.00[CEU][hapmap]
rs6898269	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72644097	1.00[EUR][1000 genomes]
rs72644098	1.00[EUR][1000 genomes]
rs7700870	1.00[CEU][hapmap]
rs7703702	1.00[CEU][hapmap]
rs7736808	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58541600-58562400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr5:58541800-58562800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:58553800-58568600	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:58554200-58562600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:58557200-58562400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:58558400-58564400	Enhancers	Fetal Heart	heart
7	chr5:58559200-58562200	Weak transcription	Psoas Muscle	Psoas
8	chr5:58559200-58564200	Weak transcription	Pancreas	Pancrea
9	chr5:58559800-58561800	Flanking Active TSS	A549	lung
10	chr5:58559800-58562400	Weak transcription	Colonic Mucosa	Colon
11	chr5:58560200-58561800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr5:58560200-58566600	Enhancers	Rectal Smooth Muscle	rectum
13	chr5:58560400-58570000	Weak transcription	Fetal Lung	lung
14	chr5:58560600-58563800	Enhancers	Fetal Intestine Large	intestine
15	chr5:58561000-58561600	Enhancers	Colon Smooth Muscle	Colon
16	chr5:58561000-58562600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:58561000-58563200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr5:58561000-58569800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:58561000-58571000	Weak transcription	Left Ventricle	heart
20	chr5:58561200-58561600	Weak transcription	Fetal Intestine Small	intestine
21	chr5:58561200-58561600	Weak transcription	Stomach Mucosa	stomach
22	chr5:58561200-58562200	Enhancers	Hela-S3	cervix
23	chr5:58561400-58563200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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