Variant report

Variant	rs6898269
Chromosome Location	chr5:58544540-58544541
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10514864	1.00[CEU][hapmap]
rs10805513	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12658429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445947	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs154223	1.00[CEU][hapmap]
rs16889611	1.00[CEU][hapmap]
rs16889682	1.00[CEU][hapmap]
rs16889696	1.00[CEU][hapmap]
rs16889743	1.00[CEU][hapmap]
rs16889796	1.00[CEU][hapmap]
rs16889846	1.00[CEU][hapmap]
rs17589633	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17589745	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17589766	0.91[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2061282	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs27185	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs27532	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3891334	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6450516	1.00[CEU][hapmap]
rs6450518	1.00[CEU][hapmap]
rs6872808	1.00[CEU][hapmap]
rs6888644	1.00[CEU][hapmap]
rs6889851	1.00[CEU][hapmap]
rs6895685	1.00[CEU][hapmap]
rs72644095	0.87[ASN][1000 genomes]
rs72644096	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs72644097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72644098	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700870	1.00[CEU][hapmap]
rs7703702	1.00[CEU][hapmap]
rs7736808	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1025807	chr5:58520050-58548231	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv520721	chr5:58520735-58558388	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58527400-58549800	Weak transcription	Aorta	Aorta
2	chr5:58535600-58551800	Weak transcription	HUVEC	blood vessel
3	chr5:58537600-58548600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:58537600-58553000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:58541000-58545400	Enhancers	Rectal Smooth Muscle	rectum
6	chr5:58541200-58558400	Weak transcription	Pancreas	Pancrea
7	chr5:58541600-58560000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:58541600-58562400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:58541800-58562800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:58542200-58551600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:58542600-58548600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:58542800-58545200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:58543200-58545800	Genic enhancers	A549	lung
14	chr5:58543200-58552400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:58543600-58552200	Weak transcription	Fetal Intestine Large	intestine
16	chr5:58544400-58545200	Enhancers	Colon Smooth Muscle	Colon
17	chr5:58544400-58545400	Strong transcription	Hela-S3	cervix
18	chr5:58544400-58545800	Weak transcription	Psoas Muscle	Psoas
19	chr5:58544400-58547800	Weak transcription	Fetal Heart	heart
20	chr5:58544400-58551400	Weak transcription	Fetal Kidney	kidney
21	chr5:58544400-58553000	Weak transcription	Left Ventricle	heart

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