Variant report

Variant	rs2754809
Chromosome Location	chr6:54070858-54070859
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1150877	0.86[CEU][hapmap];0.80[YRI][hapmap];0.85[EUR][1000 genomes]
rs12193888	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1280851	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1321884	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs1321885	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1321886	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1340661	0.82[EUR][1000 genomes]
rs1342829	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1407233	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1407234	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1417391	0.86[CEU][hapmap]
rs2754779	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2754781	0.82[EUR][1000 genomes]
rs2754782	0.83[EUR][1000 genomes]
rs2754783	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs2754786	0.82[AFR][1000 genomes]
rs2754790	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2754812	0.84[AFR][1000 genomes]
rs2754813	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs2797424	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2797426	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2797427	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs2797428	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2797429	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs2797430	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs4715446	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4715447	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs499594	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs562626	0.82[EUR][1000 genomes]
rs631441	0.81[EUR][1000 genomes]
rs677434	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs768358	0.83[EUR][1000 genomes]
rs816366	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs816368	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs816369	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs816372	0.82[EUR][1000 genomes]
rs816374	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs816376	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs816377	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs816380	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs816388	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs843826	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs843827	0.83[YRI][hapmap]
rs843828	0.86[CEU][hapmap];0.80[YRI][hapmap];0.86[EUR][1000 genomes]
rs9474745	0.85[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54058800-54101000	Weak transcription	Left Ventricle	heart
3	chr6:54069200-54072000	Enhancers	HepG2	liver
4	chr6:54070200-54098800	Weak transcription	Fetal Heart	heart
5	chr6:54070400-54095200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:54070600-54071600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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