Variant report

Variant	rs275598
Chromosome Location	chr11:45611169-45611170
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1160111	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1447566	1.00[AMR][1000 genomes]
rs1992850	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57783282	0.82[AFR][1000 genomes]
rs7482284	0.88[AFR][1000 genomes]
rs7927000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45608200-45611800	Weak transcription	Fetal Brain Male	brain
2	chr11:45609000-45611200	Weak transcription	Brain Germinal Matrix	brain
3	chr11:45609400-45614000	Weak transcription	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links