Variant report

Variant	rs57783282
Chromosome Location	chr11:45588146-45588147
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10769144	1.00[AMR][1000 genomes]
rs1992850	0.83[AFR][1000 genomes]
rs275598	0.82[AFR][1000 genomes]
rs59774911	1.00[AMR][1000 genomes]
rs60206018	1.00[AMR][1000 genomes]
rs7482284	0.85[AFR][1000 genomes]
rs7927000	0.85[AFR][1000 genomes]
rs896329	1.00[AMR][1000 genomes]
rs896333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45584000-45590400	Weak transcription	Fetal Brain Male	brain
2	chr11:45585200-45589400	Weak transcription	Brain Germinal Matrix	brain
3	chr11:45585800-45598000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45586000-45588800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:45586000-45589000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:45588000-45588200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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