Variant report
| Variant | rs2756032 |
|---|---|
| Chromosome Location | chr20:52849490-52849491 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:52843581..52850062-chr20:52850195..52855343,9 | MCF-7 | breast: | |
| 2 | chr20:52846960..52850669-chr20:52882090..52885757,4 | MCF-7 | breast: | |
| 3 | chr20:52848398..52850983-chr20:52861832..52863422,2 | MCF-7 | breast: | |
| 4 | chr20:52846307..52849581-chr20:52862205..52864323,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs366424 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs367149 | 1.00[AFR][1000 genomes] |
| rs368604 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs371012 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs372987 | 0.96[AFR][1000 genomes] |
| rs374623 | 1.00[YRI][hapmap] |
| rs377448 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs378666 | 1.00[AFR][1000 genomes] |
| rs378668 | 0.90[AFR][1000 genomes] |
| rs380980 | 0.93[AFR][1000 genomes] |
| rs383890 | 1.00[AFR][1000 genomes] |
| rs389806 | 1.00[AFR][1000 genomes] |
| rs393866 | 1.00[AFR][1000 genomes] |
| rs396957 | 0.93[AFR][1000 genomes] |
| rs404705 | 1.00[AFR][1000 genomes] |
| rs406389 | 0.96[AFR][1000 genomes] |
| rs414058 | 1.00[AFR][1000 genomes] |
| rs415230 | 0.96[AFR][1000 genomes] |
| rs416263 | 1.00[AFR][1000 genomes] |
| rs416724 | 0.96[AFR][1000 genomes] |
| rs418191 | 1.00[AFR][1000 genomes] |
| rs422615 | 1.00[AFR][1000 genomes] |
| rs422818 | 0.96[AFR][1000 genomes] |
| rs423338 | 1.00[AFR][1000 genomes] |
| rs424195 | 1.00[AFR][1000 genomes] |
| rs425792 | 0.96[AFR][1000 genomes] |
| rs429350 | 1.00[AFR][1000 genomes] |
| rs432270 | 0.96[AFR][1000 genomes] |
| rs437970 | 0.93[AFR][1000 genomes] |
| rs446835 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
| 2 | nsv834010 | chr20:52759824-52932939 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:52841000-52851000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr20:52849400-52852800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
