Variant report

Variant	rs377448
Chromosome Location	chr20:52854148-52854149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:52853983..52856679-chr20:52866149..52869118,2	MCF-7	breast:
2	chr20:52853706..52856539-chr20:52873064..52874754,2	MCF-7	breast:
3	chr20:52843581..52850062-chr20:52850195..52855343,9	MCF-7	breast:
4	chr20:52852456..52856671-chr20:52869199..52873917,7	MCF-7	breast:
5	chr20:52852394..52854365-chr20:53090904..53092475,2	MCF-7	breast:
6	chr20:52852335..52854423-chr20:53245467..53248244,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101134	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs16999413	1.00[CEU][hapmap]
rs2756032	1.00[AFR][1000 genomes]
rs366424	1.00[AFR][1000 genomes]
rs367149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs368604	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs371012	1.00[AFR][1000 genomes]
rs372987	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs374623	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs378666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs378668	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs380980	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs383890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs389806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs396957	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs404705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs406389	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs414058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs415230	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs416263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs416724	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs418191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs422615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs422818	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs423338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs424195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs425792	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs429350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs432270	0.96[AFR][1000 genomes]
rs437970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs446835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6013929	1.00[EUR][1000 genomes]
rs6013931	1.00[EUR][1000 genomes]
rs6013932	1.00[EUR][1000 genomes]
rs6013934	1.00[EUR][1000 genomes]
rs6023039	1.00[EUR][1000 genomes]
rs6023040	1.00[EUR][1000 genomes]
rs6023041	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6023046	1.00[EUR][1000 genomes]
rs6023047	1.00[EUR][1000 genomes]
rs6127144	1.00[EUR][1000 genomes]
rs707552	1.00[CEU][hapmap]
rs73285988	1.00[EUR][1000 genomes]
rs793045	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52853200-52854200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr20:52853200-52854600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr20:52853600-52854400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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