Variant report
| Variant | rs6127144 |
|---|---|
| Chromosome Location | chr20:52849973-52849974 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs367149 | 1.00[EUR][1000 genomes] |
| rs372987 | 1.00[EUR][1000 genomes] |
| rs374623 | 1.00[EUR][1000 genomes] |
| rs377448 | 1.00[EUR][1000 genomes] |
| rs378666 | 1.00[EUR][1000 genomes] |
| rs378668 | 1.00[EUR][1000 genomes] |
| rs380980 | 1.00[EUR][1000 genomes] |
| rs383890 | 1.00[EUR][1000 genomes] |
| rs389806 | 1.00[EUR][1000 genomes] |
| rs393866 | 1.00[EUR][1000 genomes] |
| rs396957 | 1.00[EUR][1000 genomes] |
| rs404705 | 1.00[EUR][1000 genomes] |
| rs406389 | 1.00[EUR][1000 genomes] |
| rs414058 | 1.00[EUR][1000 genomes] |
| rs415230 | 1.00[EUR][1000 genomes] |
| rs416263 | 1.00[EUR][1000 genomes] |
| rs416724 | 1.00[EUR][1000 genomes] |
| rs418191 | 1.00[EUR][1000 genomes] |
| rs422615 | 1.00[EUR][1000 genomes] |
| rs422818 | 1.00[EUR][1000 genomes] |
| rs423338 | 1.00[EUR][1000 genomes] |
| rs424195 | 1.00[EUR][1000 genomes] |
| rs425792 | 1.00[EUR][1000 genomes] |
| rs429350 | 1.00[EUR][1000 genomes] |
| rs437970 | 1.00[EUR][1000 genomes] |
| rs446835 | 1.00[EUR][1000 genomes] |
| rs56894192 | 0.94[ASN][1000 genomes] |
| rs59112455 | 0.94[ASN][1000 genomes] |
| rs6013929 | 1.00[EUR][1000 genomes] |
| rs6013931 | 1.00[EUR][1000 genomes] |
| rs6013932 | 1.00[EUR][1000 genomes] |
| rs6013934 | 1.00[EUR][1000 genomes] |
| rs6023039 | 1.00[EUR][1000 genomes] |
| rs6023040 | 1.00[EUR][1000 genomes] |
| rs6023041 | 1.00[EUR][1000 genomes] |
| rs6023046 | 1.00[EUR][1000 genomes] |
| rs6023047 | 1.00[EUR][1000 genomes] |
| rs6097873 | 0.87[ASN][1000 genomes] |
| rs6127150 | 0.94[ASN][1000 genomes] |
| rs6127151 | 0.87[ASN][1000 genomes] |
| rs73285988 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
| 2 | nsv834010 | chr20:52759824-52932939 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:52841000-52851000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr20:52849400-52852800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
