Variant report

Variant	rs275740
Chromosome Location	chr15:40100301-40100302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1027230	0.82[YRI][hapmap]
rs11636194	1.00[AMR][1000 genomes]
rs1166719	0.82[YRI][hapmap]
rs166704	1.00[AMR][1000 genomes]
rs16952166	1.00[AMR][1000 genomes]
rs16969385	1.00[AMR][1000 genomes]
rs16969567	1.00[AMR][1000 genomes]
rs16969594	1.00[AMR][1000 genomes]
rs16969623	1.00[AMR][1000 genomes]
rs16969673	1.00[AMR][1000 genomes]
rs16969697	1.00[AMR][1000 genomes]
rs16969698	1.00[AMR][1000 genomes]
rs16969766	1.00[AMR][1000 genomes]
rs16969787	1.00[AMR][1000 genomes]
rs16969794	1.00[AMR][1000 genomes]
rs16969798	1.00[AMR][1000 genomes]
rs16969817	1.00[AMR][1000 genomes]
rs175728	1.00[AMR][1000 genomes]
rs2631691	0.82[YRI][hapmap]
rs2631699	1.00[AMR][1000 genomes]
rs2638011	0.82[YRI][hapmap]
rs2640643	1.00[AMR][1000 genomes]
rs275722	1.00[AMR][1000 genomes]
rs275735	1.00[AMR][1000 genomes]
rs275741	1.00[AMR][1000 genomes]
rs275743	1.00[AMR][1000 genomes]
rs275745	1.00[AMR][1000 genomes]
rs423983	1.00[AMR][1000 genomes]
rs56932964	1.00[AMR][1000 genomes]
rs573879	1.00[AMR][1000 genomes]
rs584244	1.00[AMR][1000 genomes]
rs589137	0.82[YRI][hapmap]
rs603993	0.82[YRI][hapmap]
rs60403575	1.00[AMR][1000 genomes]
rs60701446	1.00[AMR][1000 genomes]
rs612775	0.82[YRI][hapmap]
rs623984	0.82[YRI][hapmap]
rs649015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs650424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684438	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73391292	1.00[AMR][1000 genomes]
rs73391299	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40076000-40103200	Weak transcription	Right Atrium	heart
2	chr15:40091000-40102600	Weak transcription	Adipose Nuclei	Adipose
3	chr15:40094200-40100400	Weak transcription	Spleen	Spleen
4	chr15:40094400-40102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:40094400-40109600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:40094400-40120400	Weak transcription	HSMMtube	muscle
7	chr15:40095400-40102600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:40096200-40120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:40096600-40101000	Weak transcription	NH-A	brain
10	chr15:40096800-40111600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:40097200-40102400	Weak transcription	HMEC	breast
12	chr15:40097200-40110000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:40097600-40100400	Weak transcription	NHEK	skin
14	chr15:40098800-40112200	Weak transcription	NHDF-Ad	bronchial
15	chr15:40099400-40100400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:40099400-40100400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:40099400-40100400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:40099400-40101000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:40099400-40109600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:40099400-40109800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:40099400-40110000	Weak transcription	Osteobl	bone
22	chr15:40099400-40110800	Weak transcription	Aorta	Aorta
23	chr15:40099400-40115000	Weak transcription	NHLF	lung
24	chr15:40099400-40116600	Weak transcription	HSMM	muscle
25	chr15:40100000-40100400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr15:40100000-40100600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:40100000-40100800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr15:40100000-40103000	Enhancers	H9 Cell Line	embryonic stem cell
29	chr15:40100000-40103200	Enhancers	H1 Cell Line	embryonic stem cell
30	chr15:40100000-40103200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:40100000-40103400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr15:40100200-40100600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:40100200-40100600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:40100200-40101000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:40100200-40103000	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr15:40100200-40103200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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