Variant report

Variant	rs275741
Chromosome Location	chr15:40159050-40159051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40152520..40154727-chr15:40158676..40160822,2	K562	blood:
2	chr15:40159004..40160839-chr15:40165327..40167555,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11636194	1.00[AMR][1000 genomes]
rs166704	1.00[AMR][1000 genomes]
rs16969567	1.00[AMR][1000 genomes]
rs16969594	1.00[AMR][1000 genomes]
rs16969623	1.00[AMR][1000 genomes]
rs16969673	1.00[AMR][1000 genomes]
rs16969697	1.00[AMR][1000 genomes]
rs16969698	1.00[AMR][1000 genomes]
rs16969766	1.00[AMR][1000 genomes]
rs16969787	1.00[AMR][1000 genomes]
rs16969794	1.00[AMR][1000 genomes]
rs16969798	1.00[AMR][1000 genomes]
rs16969817	1.00[AMR][1000 genomes]
rs175728	1.00[AMR][1000 genomes]
rs2631699	1.00[AMR][1000 genomes]
rs2640643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs275722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs275735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs275740	1.00[AMR][1000 genomes]
rs275743	1.00[AMR][1000 genomes]
rs275745	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs423983	1.00[AMR][1000 genomes]
rs56932964	1.00[AMR][1000 genomes]
rs573879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs584244	1.00[AMR][1000 genomes]
rs60403575	1.00[AMR][1000 genomes]
rs60701446	1.00[AMR][1000 genomes]
rs649015	1.00[AMR][1000 genomes]
rs650424	1.00[AMR][1000 genomes]
rs684438	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40123600-40162400	Weak transcription	Aorta	Aorta
2	chr15:40138400-40162200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:40147400-40167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:40148200-40162000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:40148200-40162000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:40148400-40162200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:40148400-40162200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:40148800-40159400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:40149400-40160400	Weak transcription	HSMM	muscle
10	chr15:40150000-40171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:40150400-40162200	Weak transcription	HUVEC	blood vessel
12	chr15:40152800-40162200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:40153000-40159200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:40153000-40161600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:40153000-40162000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:40153000-40162400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:40153000-40170000	Weak transcription	NH-A	brain
18	chr15:40153200-40162200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:40153200-40162200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:40153200-40169800	Weak transcription	NHEK	skin
21	chr15:40153400-40162000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:40153400-40166200	Weak transcription	NHLF	lung
23	chr15:40153400-40166400	Weak transcription	NHDF-Ad	bronchial
24	chr15:40154000-40162800	Weak transcription	Osteobl	bone
25	chr15:40154400-40159600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:40156400-40163000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:40157800-40162200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:40159000-40159400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:40159000-40160200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links