Variant report

Variant	rs2757504
Chromosome Location	chr1:172283524-172283525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11590165	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12038494	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12041600	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12737669	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12740971	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1992549	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1992550	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1992551	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2255690	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2586393	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2586416	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4916245	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs520918	0.80[AMR][1000 genomes]
rs6424841	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6424865	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6694387	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9425283	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172256200-172290000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:172256400-172290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172256600-172289800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:172272600-172291600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:172275200-172309800	Weak transcription	Left Ventricle	heart
6	chr1:172279000-172289600	Weak transcription	Fetal Kidney	kidney
7	chr1:172283400-172283800	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr1:172283400-172283800	Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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