Variant report

Variant	rs2758907
Chromosome Location	chr6:39262258-39262259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39233505..39239976-chr6:39262109..39267318,6	MCF-7	breast:
2	chr6:39251247..39254688-chr6:39261897..39265141,3	K562	blood:
3	chr6:39237190..39240116-chr6:39261691..39264000,2	K562	blood:
4	chr6:39243650..39250520-chr6:39262135..39271800,15	MCF-7	breast:
5	chr6:39252986..39258546-chr6:39261978..39266984,8	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1005951	0.97[ASN][1000 genomes]
rs1005952	0.97[ASN][1000 genomes]
rs10947801	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10947802	0.82[ASN][1000 genomes]
rs12209091	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12210847	0.82[ASN][1000 genomes]
rs12214600	0.82[ASN][1000 genomes]
rs1535497	0.82[ASN][1000 genomes]
rs1885616	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1885617	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1885618	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1885621	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758882	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758883	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758884	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758885	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758887	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758888	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758889	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758890	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758891	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758893	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758894	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758897	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758898	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758899	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2815048	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2815049	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2815050	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2815051	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2815052	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2815053	0.85[EUR][1000 genomes]
rs2815054	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2815057	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4714234	0.94[ASN][1000 genomes]
rs4714235	0.85[ASN][1000 genomes]
rs59582961	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62397166	0.85[EUR][1000 genomes]
rs62397167	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71556989	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9471045	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39248400-39263400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39248400-39263400	Weak transcription	Right Atrium	heart
3	chr6:39257800-39265800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:39258000-39265600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:39260800-39263200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:39260800-39263200	Weak transcription	Ovary	ovary
7	chr6:39261400-39267400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:39261600-39263600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:39261800-39262400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:39261800-39262400	Enhancers	Liver	Liver
11	chr6:39262000-39262400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:39262000-39263400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:39262200-39263400	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links