Variant report

Variant	rs4714235
Chromosome Location	chr6:39263529-39263530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39233505..39239976-chr6:39262109..39267318,6	MCF-7	breast:
2	chr6:39251247..39254688-chr6:39261897..39265141,3	K562	blood:
3	chr6:39237190..39240116-chr6:39261691..39264000,2	K562	blood:
4	chr6:39243650..39250520-chr6:39262135..39271800,15	MCF-7	breast:
5	chr6:39252986..39258546-chr6:39261978..39266984,8	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1005951	0.87[ASN][1000 genomes]
rs1005952	0.87[ASN][1000 genomes]
rs10947801	0.91[ASN][1000 genomes]
rs10947802	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11753890	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11961984	0.88[ASN][1000 genomes]
rs12194671	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12195376	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12202277	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202455	0.85[ASN][1000 genomes]
rs12207643	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12209091	0.91[ASN][1000 genomes]
rs12210847	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12211098	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214600	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13194563	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13214473	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1535497	0.97[ASN][1000 genomes]
rs1885616	0.91[ASN][1000 genomes]
rs1885617	0.91[ASN][1000 genomes]
rs1885618	0.91[ASN][1000 genomes]
rs1885621	0.91[ASN][1000 genomes]
rs2758882	0.91[ASN][1000 genomes]
rs2758883	0.91[ASN][1000 genomes]
rs2758884	0.91[ASN][1000 genomes]
rs2758885	0.91[ASN][1000 genomes]
rs2758887	0.91[ASN][1000 genomes]
rs2758888	0.91[ASN][1000 genomes]
rs2758889	0.91[ASN][1000 genomes]
rs2758890	0.91[ASN][1000 genomes]
rs2758891	0.91[ASN][1000 genomes]
rs2758893	0.91[ASN][1000 genomes]
rs2758894	0.91[ASN][1000 genomes]
rs2758895	0.88[ASN][1000 genomes]
rs2758897	0.91[ASN][1000 genomes]
rs2758898	0.91[ASN][1000 genomes]
rs2758899	0.91[ASN][1000 genomes]
rs2758907	0.85[ASN][1000 genomes]
rs2815048	0.91[ASN][1000 genomes]
rs2815049	0.91[ASN][1000 genomes]
rs2815050	0.91[ASN][1000 genomes]
rs2815051	0.91[ASN][1000 genomes]
rs2815052	0.91[ASN][1000 genomes]
rs2815053	0.84[ASN][1000 genomes]
rs2815054	0.91[ASN][1000 genomes]
rs2815057	0.91[ASN][1000 genomes]
rs36044810	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711593	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4714234	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59582961	0.89[ASN][1000 genomes]
rs62397166	0.85[ASN][1000 genomes]
rs62397167	0.91[ASN][1000 genomes]
rs62397168	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71556989	0.89[ASN][1000 genomes]
rs734408	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462515	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9471040	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9471045	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39257800-39265800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:39258000-39265600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:39261400-39267400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:39261600-39263600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:39262400-39263800	Weak transcription	Liver	Liver
6	chr6:39262600-39270600	Weak transcription	Colonic Mucosa	Colon
7	chr6:39262800-39265400	Enhancers	Fetal Stomach	stomach
8	chr6:39263000-39265400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:39263000-39266600	Enhancers	Placenta	Placenta
10	chr6:39263200-39263600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:39263200-39263800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr6:39263200-39264000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:39263200-39264000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:39263200-39264000	Enhancers	Ovary	ovary
15	chr6:39263200-39264200	Enhancers	Stomach Mucosa	stomach
16	chr6:39263200-39264400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:39263200-39265600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:39263200-39265600	Enhancers	Fetal Muscle Leg	muscle
19	chr6:39263400-39263600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:39263400-39263600	Enhancers	Esophagus	oesophagus
21	chr6:39263400-39263800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:39263400-39263800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:39263400-39263800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:39263400-39264200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:39263400-39264400	Enhancers	Gastric	stomach
26	chr6:39263400-39264600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:39263400-39264800	Enhancers	Adipose Nuclei	Adipose
28	chr6:39263400-39265200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
29	chr6:39263400-39265400	Enhancers	Fetal Lung	lung
30	chr6:39263400-39265600	Enhancers	Right Atrium	heart
31	chr6:39263400-39266000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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