Variant report

Variant	rs2760179
Chromosome Location	chr6:24550993-24550994
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24550879..24552462-chr6:24563230..24564931,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16889440	0.84[CHB][hapmap]
rs2076313	0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2243831	0.92[CHB][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2251350	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2267539	0.84[CHB][hapmap]
rs2744540	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2744541	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2744542	0.92[CHB][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2744543	0.92[CHB][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2744544	0.92[CHB][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2744557	1.00[JPT][hapmap]
rs2744607	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2744608	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2744609	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2760159	1.00[JPT][hapmap]
rs2760165	0.92[CHB][hapmap];0.82[JPT][hapmap];0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2760166	0.92[CHB][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2760167	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2760168	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2760172	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2760173	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2760174	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2760175	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2817198	1.00[JPT][hapmap]
rs2817245	0.84[CHB][hapmap]
rs2817249	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2817250	0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2817251	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2817252	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2817253	0.92[CHB][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2817254	0.92[CHB][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2817255	0.92[CHB][hapmap];0.82[JPT][hapmap];0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3857543	0.89[ASN][1000 genomes]
rs3896132	0.84[ASN][1000 genomes]
rs9467220	0.81[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467231	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
4	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
7	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:24540200-24556200	Weak transcription	Fetal Brain Female	brain
10	chr6:24548400-24583400	Weak transcription	A549	lung
11	chr6:24549600-24551200	Enhancers	HepG2	liver
12	chr6:24550200-24551000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:24550200-24566400	Weak transcription	Rectal Mucosa Donor 31	rectum

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