Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:24574532..24577193-chr6:24720841..24722364,2	MCF-7	breast:
2	chr6:24570345..24573148-chr6:24573437..24575149,2	K562	blood:
3	chr6:24570050..24571845-chr6:24573649..24576621,2	K562	blood:
4	chr6:24573525..24576686-chr6:24578975..24580891,3	K562	blood:
5	chr6:24574766..24576618-chr6:24701897..24704252,2	K562	blood:

Variant related genes	Relation type
ENSG00000272345	Chromatin interaction
ENSG00000112308	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2076313	0.82[JPT][hapmap]
rs2243831	0.82[JPT][hapmap]
rs2744542	0.82[JPT][hapmap]
rs2744543	0.82[JPT][hapmap]
rs2744556	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2760155	0.82[AFR][1000 genomes]
rs2760156	0.82[AFR][1000 genomes]
rs2760159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760165	0.82[JPT][hapmap]
rs2760172	1.00[JPT][hapmap]
rs2760173	1.00[JPT][hapmap]
rs2760174	1.00[JPT][hapmap]
rs2760175	1.00[JPT][hapmap]
rs2760179	1.00[JPT][hapmap]
rs2817198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2817250	0.82[JPT][hapmap]
rs2817251	1.00[JPT][hapmap]
rs2817253	0.82[JPT][hapmap]
rs2817255	0.82[JPT][hapmap]
rs72834991	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467220	0.82[JPT][hapmap]
rs9467231	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
3	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24548400-24583400	Weak transcription	A549	lung
6	chr6:24559600-24577600	Weak transcription	Pancreas	Pancrea
7	chr6:24562400-24583400	Weak transcription	Right Atrium	heart
8	chr6:24564400-24583400	Weak transcription	Brain Angular Gyrus	brain
9	chr6:24564400-24583400	Weak transcription	Brain Anterior Caudate	brain
10	chr6:24569200-24576600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:24570200-24583400	Weak transcription	Brain Germinal Matrix	brain
12	chr6:24570200-24583600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:24572200-24584200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:24572800-24576600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:24573600-24584000	Weak transcription	Fetal Brain Female	brain

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