Variant report

Variant	rs2764603
Chromosome Location	chr13:52114814-52114815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52112849..52115667-chr13:52128292..52129894,2	MCF-7	breast:
2	chr13:52108221..52111487-chr13:52112339..52115268,3	K562	blood:
3	chr13:52024743..52028940-chr13:52112359..52118516,11	MCF-7	breast:
4	chr13:52025248..52026911-chr13:52113097..52115719,3	K562	blood:
5	chr13:52025591..52028718-chr13:52111998..52119680,9	MCF-7	breast:
6	chr13:52025248..52027565-chr13:52113097..52117557,5	K562	blood:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000224892	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2483425	0.84[ASN][1000 genomes]
rs4643202	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs483879	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4943003	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6561638	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6561640	0.84[ASN][1000 genomes]
rs7336177	0.84[ASN][1000 genomes]
rs9526775	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9568618	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52107200-52116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:52108200-52116200	Weak transcription	Right Atrium	heart
3	chr13:52109000-52116200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr13:52109000-52116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:52112800-52116000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:52113000-52116400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:52113000-52117600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:52113200-52115200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:52113200-52115200	Weak transcription	HepG2	liver
10	chr13:52113200-52115400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:52113200-52116000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:52113200-52116000	Weak transcription	Brain Anterior Caudate	brain
13	chr13:52113200-52116200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr13:52113200-52116600	Enhancers	Colon Smooth Muscle	Colon
15	chr13:52113200-52116800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr13:52113200-52116800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr13:52113200-52117400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr13:52113400-52116400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr13:52113400-52116600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr13:52113800-52115800	Enhancers	A549	lung
21	chr13:52113800-52117200	Enhancers	NHDF-Ad	bronchial
22	chr13:52114000-52115600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr13:52114000-52116200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:52114000-52117000	Enhancers	Adipose Nuclei	Adipose
25	chr13:52114000-52117200	Enhancers	Rectal Smooth Muscle	rectum
26	chr13:52114000-52117200	Enhancers	NHLF	lung
27	chr13:52114400-52116200	Enhancers	Stomach Smooth Muscle	stomach
28	chr13:52114400-52116200	Weak transcription	HSMM	muscle
29	chr13:52114400-52117000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:52114400-52122800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr13:52114600-52115000	Weak transcription	Hela-S3	cervix
32	chr13:52114600-52115400	Weak transcription	HSMMtube	muscle
33	chr13:52114600-52116000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:52114600-52116000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr13:52114600-52116000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr13:52114600-52117400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:52114800-52115400	Weak transcription	NHEK	skin
38	chr13:52114800-52117400	Enhancers	Duodenum Smooth Muscle	Duodenum

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