Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:52089246..52092291-chr13:52156252..52159506,3	MCF-7	breast:
2	chr13:52025633..52029037-chr13:52088583..52091491,5	MCF-7	breast:
3	chr13:52021229..52031054-chr13:52088479..52100505,23	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17597531	1.00[ASW][hapmap]
rs2277443	1.00[ASW][hapmap]
rs2483425	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2764603	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3908968	1.00[ASW][hapmap]
rs4555048	1.00[ASW][hapmap]
rs4643202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6561638	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6561640	0.84[ASN][1000 genomes]
rs7336177	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9526775	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9526786	1.00[ASW][hapmap]
rs9526788	1.00[ASW][hapmap]
rs9535652	1.00[ASW][hapmap]
rs9535661	1.00[ASW][hapmap]
rs9535663	1.00[ASW][hapmap]
rs9535665	1.00[ASW][hapmap]
rs9535699	1.00[ASW][hapmap]
rs9535717	1.00[ASW][hapmap];0.83[GIH][hapmap]
rs9535722	1.00[ASW][hapmap];0.83[GIH][hapmap]
rs9535739	1.00[ASW][hapmap]
rs9563046	1.00[ASW][hapmap]
rs9568618	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4943003	WDFY2	cis	cerebellum	SCAN
rs4943003	INTS6	Cis_1M	lymphoblastoid	RTeQTL
rs4943003	CKAP2	cis	parietal	SCAN
rs4943003	HNRNPA1L2	cis	cerebellum	SCAN
rs4943003	WDFY2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52090000-52097400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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