Variant report

Variant	rs2765654
Chromosome Location	chr10:4069271-4069272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17131942	0.97[EUR][1000 genomes]
rs1886945	0.92[ASN][1000 genomes]
rs2013181	0.90[ASN][1000 genomes]
rs2031580	0.87[ASN][1000 genomes]
rs2250230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478064	0.92[ASN][1000 genomes]
rs2478065	0.92[ASN][1000 genomes]
rs2765652	0.99[ASN][1000 genomes]
rs2765653	0.99[ASN][1000 genomes]
rs2765655	0.99[ASN][1000 genomes]
rs2765660	0.92[ASN][1000 genomes]
rs2765661	0.92[ASN][1000 genomes]
rs73585267	0.97[EUR][1000 genomes]
rs73585275	0.97[EUR][1000 genomes]
rs73585277	0.97[EUR][1000 genomes]
rs943020	0.90[CHB][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4066400-4081200	Weak transcription	Gastric	stomach
2	chr10:4067400-4077000	Weak transcription	Right Atrium	heart
3	chr10:4067600-4070200	Weak transcription	Lung	lung
4	chr10:4067800-4070000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:4068000-4072800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:4068200-4071000	Weak transcription	Placenta	Placenta
7	chr10:4068800-4069600	Enhancers	NHDF-Ad	bronchial
8	chr10:4069200-4075000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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