Variant report

Variant	rs943020
Chromosome Location	chr10:4066984-4066985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17131942	0.92[EUR][1000 genomes]
rs1886945	0.90[ASN][1000 genomes]
rs2013181	0.87[ASN][1000 genomes]
rs2031580	0.85[ASN][1000 genomes]
rs2250230	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2478064	0.90[ASN][1000 genomes]
rs2478065	0.90[ASN][1000 genomes]
rs2765652	0.97[ASN][1000 genomes]
rs2765653	0.97[ASN][1000 genomes]
rs2765654	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765655	0.97[ASN][1000 genomes]
rs2765660	0.90[ASN][1000 genomes]
rs2765661	0.90[ASN][1000 genomes]
rs73585267	0.92[EUR][1000 genomes]
rs73585275	0.92[EUR][1000 genomes]
rs73585277	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4056600-4068800	Weak transcription	NHDF-Ad	bronchial
2	chr10:4064200-4067000	Weak transcription	Right Ventricle	heart
3	chr10:4065000-4068200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:4065600-4067400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:4065600-4067600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:4065800-4067200	Weak transcription	Dnd41	blood
7	chr10:4066400-4067400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:4066400-4067400	Enhancers	Fetal Brain Male	brain
9	chr10:4066400-4067600	Enhancers	NH-A	brain
10	chr10:4066400-4068000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:4066400-4068200	Enhancers	Placenta	Placenta
12	chr10:4066400-4081200	Weak transcription	Gastric	stomach
13	chr10:4066600-4067600	Enhancers	Fetal Brain Female	brain
14	chr10:4066800-4067400	Enhancers	Fetal Muscle Leg	muscle
15	chr10:4066800-4067600	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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