Variant report

Variant	rs2766536
Chromosome Location	chr6:35695541-35695542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35695422..35695996-chrX:85302095..85302896,2	Hela-S3	cervix:
2	chr1:28975092..28975663-chr6:35695502..35696163,2	Hela-S3	cervix:
3	chr6:35435945..35437939-chr6:35694170..35698146,4	MCF-7	breast:
4	chr6:35643310..35645988-chr6:35693405..35695855,2	K562	blood:
5	chr6:35463864..35467437-chr6:35691991..35696071,4	K562	blood:
6	chr6:35649031..35660636-chr6:35692310..35701686,35	K562	blood:
7	chr6:35649127..35664209-chr6:35693738..35704622,45	K562	blood:
8	chr6:35678386..35681633-chr6:35693027..35696348,6	K562	blood:
9	chr6:35632044..35634360-chr6:35695498..35697741,2	K562	blood:
10	chr6:35692072..35693972-chr6:35694350..35696021,2	MCF-7	breast:
11	chr6:35670182..35673104-chr6:35694466..35696068,2	K562	blood:
12	chr6:35654560..35658324-chr6:35694292..35699560,11	MCF-7	breast:
13	chr6:35646147..35649006-chr6:35694213..35696052,2	K562	blood:
14	chr6:35434857..35438603-chr6:35692996..35696802,4	K562	blood:
15	chr10:88515069..88515974-chr6:35695004..35695575,2	Hela-S3	cervix:
16	chr6:35464312..35466499-chr6:35694204..35696742,2	MCF-7	breast:
17	chr6:35653875..35657933-chr6:35692950..35698749,12	MCF-7	breast:
18	chr6:35464733..35466429-chr6:35694489..35696071,2	K562	blood:
19	chr6:35668653..35671140-chr6:35695541..35697338,2	K562	blood:
20	chr6:35436055..35438159-chr6:35694441..35696005,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction
ENSG00000265527	Chromatin interaction
ENSG00000223063	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000188419	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2766532	0.87[EUR][1000 genomes]
rs2817031	0.87[EUR][1000 genomes]
rs2817032	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2817035	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2817040	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4236047	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1028947	chr6:35670521-35714541	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
11	nsv885805	chr6:35685955-35779879	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv7890	chr6:35692021-35701911	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35690800-35699400	Weak transcription	Ovary	ovary
2	chr6:35691200-35698400	Enhancers	Lung	lung
3	chr6:35692200-35695800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr6:35693000-35695800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr6:35693000-35697400	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr6:35693000-35697800	Enhancers	Gastric	stomach
7	chr6:35693000-35699200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:35693200-35695800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:35693200-35695800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr6:35693200-35697000	Flanking Active TSS	Fetal Thymus	thymus
11	chr6:35693200-35697200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:35693200-35697200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:35693200-35697200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr6:35693400-35695800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr6:35693600-35695800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:35694200-35695800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:35694400-35695800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr6:35694400-35695800	Flanking Active TSS	Stomach Mucosa	stomach
19	chr6:35694400-35695800	Flanking Active TSS	NHEK	skin
20	chr6:35694600-35695600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr6:35694600-35695600	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr6:35694600-35695600	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr6:35694600-35695800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr6:35694600-35695800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr6:35694600-35695800	Flanking Active TSS	HMEC	breast
26	chr6:35694600-35696600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr6:35694800-35695600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr6:35694800-35695600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr6:35694800-35695600	Flanking Active TSS	Liver	Liver
30	chr6:35694800-35695600	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr6:35694800-35695600	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr6:35694800-35695600	Flanking Active TSS	HSMM	muscle
33	chr6:35694800-35695600	Flanking Active TSS	HSMMtube	muscle
34	chr6:35694800-35695800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr6:35694800-35695800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr6:35694800-35695800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:35694800-35695800	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr6:35694800-35695800	Flanking Active TSS	Colonic Mucosa	Colon
39	chr6:35694800-35695800	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr6:35694800-35695800	Flanking Active TSS	K562	blood
41	chr6:35694800-35696400	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr6:35694800-35696600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr6:35695000-35695600	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr6:35695000-35695600	Flanking Active TSS	Brain Substantia Nigra	brain
45	chr6:35695000-35695600	Flanking Active TSS	Fetal Intestine Large	intestine
46	chr6:35695000-35695600	Flanking Active TSS	Fetal Intestine Small	intestine
47	chr6:35695000-35695600	Flanking Active TSS	Fetal Lung	lung
48	chr6:35695000-35695600	Active TSS	Right Ventricle	heart
49	chr6:35695000-35695600	Flanking Active TSS	GM12878-XiMat	blood
50	chr6:35695000-35695600	Flanking Active TSS	NHLF	lung

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