Variant report

Variant	rs2768779
Chromosome Location	chr13:30276371-30276372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1411732	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1590951	1.00[ASN][1000 genomes]
rs17073761	0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs17073762	0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs1952851	1.00[CHD][hapmap]
rs4299006	1.00[ASN][1000 genomes]
rs7326521	1.00[ASN][1000 genomes]
rs745473	1.00[ASN][1000 genomes]
rs7989488	1.00[ASN][1000 genomes]
rs874798	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30271800-30277400	Weak transcription	Esophagus	oesophagus
2	chr13:30272000-30277000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30273200-30276600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:30275800-30276800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:30276000-30276600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:30276000-30276600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:30276000-30276800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:30276200-30276600	Enhancers	NHDF-Ad	bronchial
9	chr13:30276200-30276600	Enhancers	Osteobl	bone
10	chr13:30276200-30276800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:30276200-30276800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:30276200-30276800	Enhancers	Hela-S3	cervix
13	chr13:30276200-30279000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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