Variant report

Variant	rs7326521
Chromosome Location	chr13:30317603-30317604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10492458	0.89[EUR][1000 genomes]
rs1411732	1.00[ASN][1000 genomes]
rs1590951	1.00[ASN][1000 genomes]
rs17073761	1.00[ASN][1000 genomes]
rs17073762	1.00[ASN][1000 genomes]
rs17625384	0.93[EUR][1000 genomes]
rs2768779	1.00[ASN][1000 genomes]
rs4299006	1.00[ASN][1000 genomes]
rs745473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989488	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs874798	1.00[ASN][1000 genomes]
rs9551735	0.94[EUR][1000 genomes]
rs9551740	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30316400-30320400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr13:30317000-30318400	Enhancers	Fetal Muscle Leg	muscle
3	chr13:30317000-30318400	Enhancers	Fetal Stomach	stomach
4	chr13:30317000-30318600	Enhancers	Colon Smooth Muscle	Colon
5	chr13:30317200-30317800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:30317200-30317800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:30317200-30317800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:30317200-30317800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:30317200-30317800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:30317200-30317800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:30317200-30317800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:30317200-30317800	Enhancers	Fetal Muscle Trunk	muscle
13	chr13:30317200-30317800	Enhancers	GM12878-XiMat	blood
14	chr13:30317200-30318000	Enhancers	Fetal Kidney	kidney
15	chr13:30317200-30318000	Enhancers	Stomach Mucosa	stomach
16	chr13:30317200-30318000	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr13:30317200-30318200	Enhancers	Fetal Lung	lung
18	chr13:30317200-30318400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr13:30317200-30320200	Enhancers	Rectal Smooth Muscle	rectum
20	chr13:30317400-30317800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:30317400-30317800	Enhancers	Esophagus	oesophagus
22	chr13:30317400-30317800	Enhancers	Pancreas	Pancrea
23	chr13:30317400-30317800	Enhancers	Osteobl	bone
24	chr13:30317400-30318000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:30317400-30318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr13:30317400-30318200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr13:30317400-30318200	Enhancers	Placenta Amnion	Placenta Amnion
28	chr13:30317400-30319000	Enhancers	Lung	lung
29	chr13:30317600-30317800	Enhancers	Right Ventricle	heart
30	chr13:30317600-30318200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr13:30317600-30318400	Enhancers	NHDF-Ad	bronchial
32	chr13:30317600-30319000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr13:30317600-30319000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr13:30317600-30320000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr13:30317600-30324200	Weak transcription	Adipose Nuclei	Adipose
36	chr13:30317600-30335800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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