Variant report

Variant	rs2772460
Chromosome Location	chr12:41242056-41242057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10431586	0.90[EUR][1000 genomes]
rs10735960	0.82[EUR][1000 genomes]
rs10735961	0.82[EUR][1000 genomes]
rs10879332	0.88[ASN][1000 genomes]
rs10879333	0.88[ASN][1000 genomes]
rs11178706	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11178843	0.85[EUR][1000 genomes]
rs11178982	0.86[JPT][hapmap]
rs12301919	0.85[EUR][1000 genomes]
rs1348227	0.90[ASN][1000 genomes]
rs17621741	0.86[JPT][hapmap]
rs1985044	0.81[EUR][1000 genomes]
rs2034159	0.85[EUR][1000 genomes]
rs2044091	0.80[ASN][1000 genomes]
rs2225314	0.90[EUR][1000 genomes]
rs2405508	0.94[ASN][1000 genomes]
rs2405511	0.91[ASN][1000 genomes]
rs2772459	0.90[EUR][1000 genomes]
rs312267	0.96[ASN][1000 genomes]
rs312268	0.96[ASN][1000 genomes]
rs312275	0.98[ASN][1000 genomes]
rs312277	0.96[ASN][1000 genomes]
rs312278	0.95[ASN][1000 genomes]
rs312279	0.96[ASN][1000 genomes]
rs312280	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs312281	0.96[ASN][1000 genomes]
rs312284	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4453315	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4767992	0.84[ASN][1000 genomes]
rs4768319	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs61913941	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7134512	0.90[EUR][1000 genomes]
rs7300865	0.87[EUR][1000 genomes]
rs7488448	0.87[EUR][1000 genomes]
rs7488883	0.97[ASN][1000 genomes]
rs7958928	0.83[EUR][1000 genomes]
rs7968835	0.94[ASN][1000 genomes]
rs7970381	0.84[ASW][hapmap];0.84[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs7975149	0.82[EUR][1000 genomes]
rs7980104	0.87[EUR][1000 genomes]
rs7980964	0.87[EUR][1000 genomes]
rs9325193	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41226800-41266400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:41232000-41248000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links