Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10506179	0.81[ASN][1000 genomes]
rs10784949	0.82[ASN][1000 genomes]
rs10879308	0.84[AFR][1000 genomes]
rs10879309	0.82[AFR][1000 genomes]
rs10879332	0.94[ASN][1000 genomes]
rs10879333	0.94[ASN][1000 genomes]
rs10879335	0.85[AFR][1000 genomes]
rs10879362	0.82[ASN][1000 genomes]
rs11178706	0.83[ASN][1000 genomes]
rs11178891	0.84[AFR][1000 genomes]
rs12296447	0.84[AFR][1000 genomes]
rs1345052	0.91[AFR][1000 genomes]
rs1348227	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2044091	0.93[ASN][1000 genomes]
rs2405508	0.90[ASN][1000 genomes]
rs2405511	0.93[ASN][1000 genomes]
rs2772460	0.84[ASN][1000 genomes]
rs312267	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs312268	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs312275	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs312277	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs312278	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs312279	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs312280	0.86[ASN][1000 genomes]
rs312281	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs312284	0.86[ASN][1000 genomes]
rs4768319	0.88[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7136705	0.84[AFR][1000 genomes]
rs7300776	0.86[AFR][1000 genomes]
rs7305101	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7305488	0.90[AFR][1000 genomes]
rs7309734	0.84[AFR][1000 genomes]
rs7488883	0.84[ASN][1000 genomes]
rs7968835	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41285000-41304600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:41294800-41297000	Weak transcription	Ovary	ovary

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